Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum tuberosum

ABSTRACT: Genotyping-by-sequencing of Indian potatoes

PROVIDER: PRJNA488869 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7785900_1.fastq.gz	Fastqsanger.gz
	SRR7785900_2.fastq.gz	Fastqsanger.gz
	SRR7785910_1.fastq.gz	Fastqsanger.gz
	SRR7785910_2.fastq.gz	Fastqsanger.gz
	SRR7785920_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

RNA-Seq of allotetraploid wild potato Solanum acaule and autotetraploid potato Solanum tuberosum cv. Atlantic

Project description:Potato wild relatives (Solanum section Petota) are a source of genetic diversity for improving traits in modern cultivars (S. tuberosum) to meet climate challenges. Potatoes are susceptible to multiple abiotic and biotic stresses and have undergone constant improvement through breeding programs worldwide. The allotetraploid S. acaule Bitter has been used to introgress cold tolerance into potato breeding germplasm. The cold challenged transcriptome of S. acaule was compared with that of autotetraploid S. tuberosum cv. Atlantic, and was found to have fewer differentially expressed genes than the latter. Specifically, subgenome 1 has less downregulated alleles compared to subgenome 2 and S. tuberosum.

2025-05-31 | GSE268611 | GEO

Solanum tuberosum

Project description:Genomic basis of divergence of modern cultivated potatoes

| PRJNA944441 | ENA

RNA sequencing results using Solanum tuberosum cv. Desiree at NT and HT at 3 and 8 weeks

Project description:Leaves of the potatoes grown for 3 and 8 weeks at NT and HT were harvested for total RNA extraction. Total RNA was extracted from 100 mg of ground leaves using the Trizol reagent (MRC) following the manufacturer’s instructions. Five micro gram of each RNA sample were generated for a strand-specific library as previously described. The library was containing inserts of 150-200 bp. For RNA sequencing, paired-end 150 nt sequencing was performed using a HiSeq 4000 platform (Illumina, USA) at Microgen (Korea).

2022-09-28 | GSE158644 | GEO

Solanum tuberosum

Project description:Solanum tuberosum Genotyping by Sequencing

| PRJNA1032882 | ENA

Solanum tuberosum

Project description:Genome design for inbred lines generates vigorous hybrid potatoes

| PRJNA641265 | ENA

Solanum tuberosum

Project description:Differences in the transcriptomes of organically and conventionally grown potatoes.

| PRJNA138483 | ENA

Solanum tuberosum strain:Sassy

Project description:k-mer analysis of genome-edited potatoes

| PRJDB15324 | ENA

Solanum tuberosum

Project description:Genotyping by Sequencing-Transcriptomics for Diversity and Application of Genomic Selection in Tetraploid Potato

| PRJNA479522 | ENA

Solanum tuberosum

Project description:orf137 and orf320 are Candidates for Mitochondrial Genes Associated with W/alpha and T/beta-type Cytoplasmic Male Sterility in Potatoes

| PRJDB20315 | ENA

Solanum tuberosum

Project description:orf137 and orf320 are Candidates for Mitochondrial Genes Associated with W/alpha and T/beta-type Cytoplasmic Male Sterility in Potatoes

| PRJDB20298 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data