Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Functional characterization of anchorene in Arabidopsis

PROVIDER: PRJNA489360 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7786280_1.fastq.gz	Fastqsanger.gz
	SRR7786280_2.fastq.gz	Fastqsanger.gz
	SRR7786281_1.fastq.gz	Fastqsanger.gz
	SRR7786281_2.fastq.gz	Fastqsanger.gz
	SRR7786282_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:Functional characterization of miR858 from Arabidopsis thaliana

| PRJNA717394 | ENA

Arabidopsis thaliana

Project description:Functional characterization of Taf4b in Arabidopsis thaliana

| PRJNA195614 | ENA

Arabidopsis thaliana

Project description:Functional characterization of Arabidopsis WRKY15 overexpressor plants

| PRJNA125191 | ENA

Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissue

Project description:Functional characterization of Arabidopsis ARGONAUTE 3 in reproductive tissue

| PRJNA510767 | ENA

Arabidopsis thaliana

Project description:all comparison-Functional characterization of Arabidopsis NAP1/SET genes

| PRJNA101485 | ENA

Arabidopsis thaliana strain:Columbia (Col-0) Transcriptome or Gene expression

Project description:This study investigates extent and functional significance of alternative splicing in Arabidopsis thaliana defense against the bacterial pathogen Pseudomonas syringae pv tomato (Pst). We have provided a detailed characterization of the Arabidopsis thaliana transcriptional response to Pseudomonas syringae infection in both susceptible and resistant hosts. We carried out two independent inoculation experiments (biological replicates) for each treatment. Col-0 is susceptible to virulent Pst DC3000 but has a functional RPS4 resistance gene effective against DC3000 expressing AvrRps4

2013-03-06 | E-MTAB-4450 | biostudies-arrayexpress

Project description:Functional characterization of two MYB transcription factors in Arabidopsis thaliana

| PRJNA658220 | ENA

Arabidopsis thaliana

Project description:bigun transcriptomics-Functional characterization of BIGUN proteins in Arabidopsis thaliana

| PRJNA328512 | ENA

Arabidopsis thaliana

Project description:sdg25 and sdg26-Functional characterization of Arabidopsis NAP1/SET genes

| PRJNA101489 | ENA

A biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites

Project description:Despite great advances in sequencing capacity, generating functional information for non-model organisms remains a challenge. One solution lies in an improved ability to predict genetic circuits based on primary DNA sequence combined with the characterization of regulatory molecules from model species. Here, we focus on the LEAFY (LFY) transcription factor, a conserved master regulator of floral development. Starting with biochemical and structural information, we built a biophysical model describing LFY DNA binding specificity in vitro that accurately predicts in vivo LFY binding sites in the Arabidopsis thaliana genome. Extending the model to other species, we show that it can correctly identify functional homologs of known LFY targets from Arabidopsis thaliana in other angiosperms, even if a functional shift between orthologs and paralogs has occurred. Moreover, this model demonstrates the evolutionary fluidity of the link between LFY and one of its target genes, underlining how this regulatory interaction can be conserved despite changes in position, sequence and affinity of the LFY binding sites. Our study shows that the cis-element fluidity recently illustrated in animals also exists in plants, and that it can be detected without any experimental work in each individual species, using a biophysical transcription factor model. A. thaliana LEAFY ChIP-seq w control, 2 replicates

2011-05-13 | E-GEOD-24568 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data