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Human gut metagenome

ABSTRACT: Nanopore long read assembly of the human gut metagenome

PROVIDER: PRJNA508395 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRR8427256_1.fastq.gz	Fastqsanger.gz
	SRR8427257_1.fastq.gz	Fastqsanger.gz
	SRR8427258_1.fastq.gz	Fastqsanger.gz
	SRR9847860_1.fastq.gz	Fastqsanger.gz

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human gut metagenome

Project description:Long-read metagenomic data of gut microbiota

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Fruit and vegetable supplemented-diet ameliorates dextran sodium sulfate (DSS) -induced colitis by modulating host transcriptome and gut metagenome response

Project description:Dietary intake of fruits and vegetables (FV) has been inversely associated with lower risk of ulcerative colitis. A pig model was used to evaluate the impact of feeding FV on the host response to dextran sulfate sodium (DSS)-induced colitis. Methods: Six-week-old pigs were fed a grower diet alone or supplemented with lyophilized FV equivalent to the half (half-FV) or full (full-FV) daily levels recommended for humans by the Dietary Guidelines for Americans (DGA). Pigs were fed a 1) grower diet alone (negative control), 2) grower diet and orally treated with 4% DSS for 10 days to induce colitis (positive control), 3) half-FV diet treated with 4% DSS or 4) full-FV diet treated with 4% DSS. Pigs were monitored for the development of clinical signs of colitis. Proximal colon (PC) contents and mucosa (PCM) were collected for gut metagenome, tissue transcriptome and histopathological analysis. Results: Pigs fed the full-FV diet did not exhibit diarrhea, showed less fecal occult blood (FOB), PCM crypt hyperplasia but with no differential expressed genes (DEG) or changes in PC microbiome diversity (p < 0.05). Pigs within the half-FV group exhibited increased group FOB and DEG associated with tissue remodeling, crypt and goblet cell hyperplasia in the PCM and no changes in PC microbiome diversity and two pigs exhibiting diarrhea (p < 0.05). Pigs within the DSS positive control group exhibited a reduced DEG involved with intestinal immune response and PC microbiome diversity with altered metagenome, increased group PCM erosion and FOB with persistent diarrhea in one pig (p < 0.05) Conclusions: Overall, our results showed that pigs fed a three-week full-FV supplemented diet, were resistant to DSS-induced colitis with a differential dose-dependent protective effect on host intestinal tissue and gut metagenome when exposed to an inflammatory challenge.

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Project description:human gut metagenome Metagenomic assembly

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human gut metagenome

Project description:human gut metagenome Metagenomic assembly

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human gut metagenome

Project description:human gut metagenome Metagenomic assembly

| PRJNA857351 | ENA

human gut metagenome

Project description:human gut metagenome Metagenomic assembly