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Empty SV40 capsids (VLPs) significantly improve survival and recovery of septic rats

ABSTRACT: Empty SV40 capsids (VLPs) significantly improve survival and recovery of septic rats

PROVIDER: PRJNA515732 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6459120.fastq.gz	Fastqsanger.gz
	SRR6459130.fastq.gz	Fastqsanger.gz
	SRR6459121.fastq.gz	Fastqsanger.gz
	SRR6459131.fastq.gz	Fastqsanger.gz
	SRR6459122.fastq.gz	Fastqsanger.gz

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Analysis of pathways elicited by empty SV40 capsids (VLPs) in septic rats 6 hours post 2CLP operation

Project description:During the first hours after infection, before SV40 DNA enters the nucleus, empty capsids (VLPs) and the wild-type virus have the same effect on cellular signaling. VLPs were previously found to ameliorate toxic acute kidney injury (AKI) in a mouse model, counteracting apoptosis by inducing the Akt-1 survival pathway. Here we tested their effect on severe sepsis in rats. VLP pre-treatment increased survival and recovery from zero to 75%. RNAseq studies demonstrated that unlike AKI, here the VLPs did not induce survival pathways. Instead they affected thousands of genes and many cellular functions, eliminating deleterious pathways and inducing beneficial ones: immune response, resolution of inflammation, regeneration and cell and system homeostasis. In contrast, only four genes were affected following VLP administration to healthy rats. We propose that SV40 VLPs respond specifically to perturbation in cellular activities. The study suggests that diseases with complex pathophysiology may require treatments affecting wide-spectrum functions.

2020-03-02 | GSE109041 | GEO

Analysis of pathways elicited by empty SV40 capsids (VLPs) in septic rats 24 hours post 2CLP operation

2020-03-02 | GSE125276 | GEO

Empty SV40 capsids (VLPs) significantly improve survival and recovery of septic rats

Project description:This SuperSeries is composed of the SubSeries listed below.

2020-03-02 | GSE125277 | GEO

Analysis of pathways elicited by empty SV40 capsids (VLPs) in septic rats 6 hours post 2CLP operation

Project description:Analysis of pathways elicited by empty SV40 capsids (VLPs) in septic rats 6 hours post 2CLP operation

| PRJNA429471 | ENA

Analysis of pathways elicited by empty SV40 capsids (VLPs) in septic rats 24 hours post 2CLP operation

Project description:Analysis of pathways elicited by empty SV40 capsids (VLPs) in septic rats 24 hours post 2CLP operation

| PRJNA515734 | ENA

Empty SV40 capsids increase survival of septic rats by eliciting numerous host signaling networks that participate in a number of systemic functions.

Project description:Sepsis is an excessive, dysregulated immune response to infection that activates inflammatory and coagulation cascades, which may lead to tissue injury, multiple organ dysfunction syndrome and death. Millions of individuals die annually of sepsis. To date, the only treatment available is antibiotics, drainage of the infection source when possible, and organ support in intensive care units. Numerous previous attempts to develop therapeutic treatments, directed at discreet targets of the sepsis cascade, could not cope with the complex pathophysiology of sepsis and failed. Here we describe a novel treatment, based on empty capsids of SV40 (nanocapsids - NCs). Studies in a severe rat sepsis model showed that pre-treatment by NCs led to a dramatic increase in survival, from zero to 75%. Transcript analyses (RNAseq) demonstrated that the NC treatment is a paradigm shift. The NCs affect multiple facets of biological functions. The affected genes are modified with time, adjusting to the recovery processes. The NCs effect on normal control rats was negligible. The study shows that the NCs are capable of coping with diseases with intricate pathophysiology. Further studies are needed to determine whether when applied after sepsis onset, the NCs still improve outcome.

| S-EPMC7021236 | biostudies-literature

Shotgun sequencing of hankyphage capsids

Project description:In order to investigate the DNA packaging of the hankyphage, we performed PEG-precipitation of lysates of the B. thetaiotaomicron jmh43 strain and the jmh43::dcas9-repcHP strain (which exhibits and enhanced hankyphage induction). This was followed by a DNAse and Benzonase treatment and a subsequent SDS treatment to open the capsids and expose the DNA. Of note, jmh43::dcas9-repcHP lysate was sequenced using a PCR-free kit, whereas for jmh43 a previous step of PCR amplification was required to obtain enough DNA for Illumina sequencing.

2025-04-10 | E-MTAB-14979 | biostudies-arrayexpress

Shotgun sequencing of hankyphage capsids

Project description:Shotgun sequencing of hankyphage capsids

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Transcriptome analysis of dendritic cells activated by VLPs or ncRNAVLPs

Project description:Analysis of the effect on dendritic cells of the injection in C57BL/6 mice of VLPs or ncRNAVLPs at gene expression level.

2016-06-02 | GSE70557 | GEO

Early transcriptional signature in murine cDCs post immunisation with VLPs containing TLR ligands

Project description:We have investigated the in vivo transcriptional signature in dendritic cells (DCs) from mice immunised with VLPs containing distinct classes of nucleic acid and correlated the expression patterns with the efficiency of induced T cell responses.

2019-07-13 | GSE134192 | GEO

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