Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Nuclear phylogenomics of Dioscorea yams

PROVIDER: PRJNA530017 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8819980_1.fastq.gz	Fastqsanger.gz
	SRR8819980_2.fastq.gz	Fastqsanger.gz
	SRR8819990_1.fastq.gz	Fastqsanger.gz
	SRR8819990_2.fastq.gz	Fastqsanger.gz
	SRR8819981_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 58

Similar Datasets

Project description:Palm genera nuclear phylogenomics

| PRJNA1131474 | ENA

Grass Phylogeny Working Group III

Project description:Nuclear phylogenomics of the grass family (Poaceae)

| PRJEB79360 | ENA

Mutation Mapping of 40 Streptococcus suis strains

Project description:Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. In this study,we evaluated the genetic difference of 40 Streptococcus suis strains belonging to various sequence types by comparative genomic hybridization to identify genes associated with the variation in pathogenicity using NimbleGen’s tilling microarray platform. Application of Comparative Phylogenomics to Identify Genetic Differences Relating to Pathogenicity of Streptococcus suis

2014-05-20 | GSE40035 | GEO

Analysis of the N-Glycoforms of a Chinese Yam (Dioscorea opposita Thunb.) Glycoprotein 30CYGPAnalysis of the N-Glycoforms of a Chinese Yam (Dioscorea opposita Thunb.) Glycoprotein 30CYGP

Project description:Chinese yam (Dioscorea opposita Thumb.) is a highly nutritional perennial herbaceous rhizome. N-glycoforms from Chinese yam glycoprotein were analyzed, and the major glycoprotein in yam be identificated.

2019-10-28 | PXD015888 | Pride

Project description:Phylogenomics of Gesneriaceae using targeted capture of nuclear genes

| PRJNA684442 | ENA

Project description:Dioscorea opposita

| PRJNA1149576 | ENA

Project description:Dioscorea opposite

| PRJNA983427 | ENA

Transcription profiling by array of serum microRNAs in rat livers to screen for specific biomarkers to be used in diagnosis of compound- and herb-induced liver injury.

Project description:In this study, we employed a strategy to screen miRNA expression profiles in liver tissue by miRCURY LNA(tm) microRNA array analysis followed by TaqMan probe-based quantitative reverse transcription-PCR (qRT-PCR) to validate the miRNA expression profiles in serum and liver of two parallel rat drug-induced liver injury (DILI) models induced by a compound (acetaminophen, APAP) or an herb (Dioscorea bulbifera, DB).

2012-09-08 | E-MEXP-3364 | biostudies-arrayexpress

Interplay of redox modulators and carbohydrate metabolism enzymes in Dioscorea alata tuber degradation and formation.

Project description:Dioscorea tuber undergoes multiple morphological and bio-chemical changes during its 9 month growth period. A stage specific gel free analysis was done to understand the proteomic changes associated with tuber development and assign markers. On the basis of morphological traits the tuber life cycle was divided into four developmental stages namely; root initiation (S1), vegetative growth (S2), new tuber initiation (S3) and tuber maturation (S4) which was validated by principal component analysis (PCA). The first most comprehensive data set was generated by using the pooled genome information from Dioscorea + Solanum + Viridateplantae as reference set identifying 78.2% of the total 3,681 proteins. The over-representation analysis of proteins using PANTHER and KEGG MAPPER revealed both expected and novel biological processes relevant to each developmental stage. A high abundance of the enzymes of ascorbate-glutathione cycle, carbohydrate metabolism, Glycolysis, TCA cycle was detected during tuber degradation and formation. The Glycolytic and starch biosynthesis pathway were re-constructed using the information derived from the proteome data. Novel transcription factors (14) associated with oxidative stress tolerance were identified in D.alata proteome. In conclusion, the data set comprehensively describes the proteome of Dioscorea tuber and provided growth specific markers (APx, MDHAR, invertase for degradation and sucrose synthase for formation) that would pave the way to a systematic study of the tuber. The study provides information that may influence the direction of research for improving the productivity of this under-utilized crop.

2021-01-04 | PXD014734 | Pride

Project description:Nuclear and mitochondrial phylogenomics of the Diplostomoidea and Diplostomida (Digenea, Platyhelminthes)

| PRJNA480678 | ENA