Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Heterodera schachtii Transcriptome

PROVIDER: PRJNA530532 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8290131_1.fastq.gz	Fastqsanger.gz
	SRR8290131_2.fastq.gz	Fastqsanger.gz
	SRR8306866_1.fastq.gz	Fastqsanger.gz
	SRR8306866_2.fastq.gz	Fastqsanger.gz
	SRR8926332_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Heterodera schachtii

Project description:Heterodera schachtii Transcriptome

| PRJNA506892 | ENA

Col-0 vs rbohD/F

Project description:This experiment analyzes the changes in expression of twelve days old Arabidopsis roots after 10 hours of beet cyst nematode Heterodera schachtii treatment

2021-06-14 | E-MTAB-10625 | biostudies-arrayexpress

Heterodera schachtii

Project description:Heterodera schachtii overview

| PRJNA234307 | ENA

DNA sequencing of Heterodera schachtii IRS (Woensdrecht) population

Project description:In order to polish a long-read genome assembly, short-read illumina data was obtained from Heterodera schachtii cysts (Woensdrecht population from IRS, the Netherlands). Cysts where obtained from infected plant material. Nematodes were cleaned using a sucrose gradient centrifugation step. Thereafter DNA was extracted and used for library preparation and sequencing by Illumina NextSeq500.

2023-11-03 | E-MTAB-13472 | biostudies-arrayexpress

Differential gene expression in roots of tcp9 and tcp20 mutants of Arabidopsis thaliana upon Heterodera schachtii infection as measured by RNAseq

Project description:We compared the gene expression of wild-type Col-0, tcp9, tcp20, and the double mutant tcp9tcp20. We either infected or mock-infected the plants with the beet cyst nematode Heterodera schachtii and measured the root transcriptome after 24, 48, and 72 hours post infection using RNA-seq. The aim of the experiment was to determine whether the tcp mutatants affected gene expression patterns induced by nematode infection.

2022-09-09 | E-MTAB-11649 | biostudies-arrayexpress

Heterodera schachtii

Project description:Heterodera schachtii Transcriptome or Gene expression

| PRJNA234080 | ENA

Heterodera schachtii SUGR sequencing

Project description:Heterodera schachtii SUGR sequencing

| PRJEB71637 | ENA

RNA tomography reveals spatial gene expression maps of Arabidopsis thaliana roots infected with Heterodera schachtii

Project description:Plant-parastic nematodes cause substantial crop losses worldwide. The sedentary endoparasite nematode Heterodera schachtii induces specialized feeding structures in host roots. The molecular mechanisms underlying feeding structure initiation and development remain poorly understood. High-resolution, spatially resolved transcriptomics is required to study localized gene expression patterns underlying feeding structure formation. Here, we introduce RNA tomography for plants, a powerful untargeted spatial transcriptomics technology that allows studying gene expression at cellular resolutions. We applied RNA tomography to Arabidopsis thaliana roots infected with H. schachtii at 1 and 2 days post inoculation. Our findings provide novel insights into early nematode parasitism.

2025-09-18 | GSE297648 | GEO

Wolbachia endosymbiont of Heterodera schachtii isolate:wHet from Heterodera schachtii

Project description:Wolbachia endosymbiont of Heterodera schachtii isolate:wHet from Heterodera schachtii Genome sequencing

| PRJNA1148971 | ENA

Heterodera schachtii Gland Cell Sequencing

Project description:Heterodera schachtii Gland Cell Sequencing

| PRJEB71499 | ENA