Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: A METAGENOMIC STUDY OF BANANA NEMATODE ANTAGONISTS IN CANARY ISLANDS

PROVIDER: PRJNA540248 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8986790_1.fastq.gz	Fastqsanger.gz
	SRR8986790_2.fastq.gz	Fastqsanger.gz
	SRR8986800_1.fastq.gz	Fastqsanger.gz
	SRR8986800_2.fastq.gz	Fastqsanger.gz
	SRR8986810_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 148

Similar Datasets

Project description:A METAGENOMIC STUDY OF BANANA NEMATODE ANTAGONISTS IN COSTA RICA

| PRJNA632470 | ENA

ABC-Tenerife

Project description:Study of airborne bacterial community composition in Tenerife, Canary Islands

| PRJEB46651 | ENA

Genome-scale DNA methylation profiling of lung adenocarcinoma: validation using Ontario Tumor Bank samples

Project description:The independent population of lung adenocarcinoma and adjacent non-tumor lung used for verification of the EDRN/Canary Foundation study

2012-03-21 | GSE32866 | GEO

Discovery and Differential Expression of miRNAs in Fusarium Wilt Resistant and Susceptible Banana Varieties

Project description:MicroRNAs (miRNAs) are a class of endogenous non-coding small RNAs that regulate targeted mRNAs by degrading or repressing translation, considered as post-transcrption regulators. So far, a large number of miRNAs have been discovered in model plants, but little information is available on miRNAs in banana. In this study, by sequencing the small RNA (sRNA) transcriptomes of Fusarium wilt resistant and susceptible banana varieties, 139 members in 38 miRNA families were discovered, and six out of eight new miRNAs were confirmed by RT-PCR. According to the analysis of sRNA transcriptome data and qRT-PCR verification, some miRNAs were differentially expressed between Fusarium wilt resistant and susceptible banana varieties. Two hundred and ninety-nine and 31 target genes were predicted based on the draft maps of banana B genome and Fusarium oxysporum (FOC1, FOC4) genomes respectively. Specifically, two important pathogenic genes in Fusarium oxysporum genomes, feruloyl esterase gene and proline iminopeptidase gene, were targeted by banana miRNAs. These novel findings may provide a new strategy for the prevention and control of Fusarium wilt in banana.

2016-10-14 | GSE74005 | GEO

Serinus canaria strain:SECAWH01

Project description:The canary is a finch-like passerine bird native to the Canary Islands

| PRJNA43319 | ENA

Soils_Canary_Islands

Project description:Soils from different localisation in the Canary islands

| PRJEB24160 | ENA

Project description:Assembly of Micromeria genomes from the Canary Islands

| PRJNA1193890 | ENA

Project description:Experimental study of microbial diversity at the Tagoro submarine volcano (El Hierro, Canary Islands)

| PRJNA1098582 | ENA

Diversity of microscopic fungi from soils of La Plama Canary Islands

Project description:Diversity of microscopic fungi from soils of Canary Islands

| PRJEB55089 | ENA

Ovarian epithelial carcinoma tumors and cell lines

Project description:This SuperSeries is composed of the following subset Series: GSE27223: Ovarian Tumor Tissue Expression Study GSE27225: Canary Ovarian Cell Line Gene Expression Refer to individual Series

2011-02-12 | E-GEOD-27257 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data