Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome of wild-type vs sso1 deletion mutant

PROVIDER: PRJNA580269 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10360439_1.fastq.gz	Fastqsanger.gz
	SRR10360439_2.fastq.gz	Fastqsanger.gz
	SRR10360440_1.fastq.gz	Fastqsanger.gz
	SRR10360440_2.fastq.gz	Fastqsanger.gz
	SRR10360441_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Mycobacterium tuberculosis

Project description:Wild type H37Rv vs htpX deletion mutant

| PRJNA109129 | ENA

Francisella tularensis

Project description:LVS iclR deletion mutant vs. wild-type LVS

| PRJNA130979 | ENA

Danio rerio

Project description:prdm1a mutant vs. wild type

| PRJNA139635 | ENA

Streptococcus mutans

Project description:835np mutant vs wild-type

| PRJNA229403 | ENA

Corynebacterium glutamicum

Project description:Corynebacterium glutamicum ATCC13032 Cells: Control (Wild-Type) vs cg0196 Deletion Mutant

| PRJNA147103 | ENA

Peroxide stress in Sigma54 mutant and Wt

Project description:Analyses of the Wild type and the sigma 54 mutant strain NZ7306 with and without peroxide treatment: A Lactobacillus plantarum strain with a deletion in the alternative sigma factor 54 (?54) encoding gene rpoN, displayed a 100 fold higher sensitivity to peroxide as compared to its parental strain. This feature could be due to ?54-dependent regulation of genes involved in peroxide stress response. However, transcriptome analyses of the wild type and the mutant strain during peroxide exposure did not support such a role for ?54. Subsequent experiments revealed that the impaired expression of the mannose PTS operon in the rpoN mutant caused the observed increased peroxide sensitivity. Keywords: genetic modification Two conditions were tested in the transcriptome comparison, the condition “peroxide stress exposure” and the condition “deletion of the rpoN-gene”. This resulted in 4 samples: “Wild type normal”, “rpoN-mutant normal”, “Wild type with peroxide”, and “rpoN-mutant with peroxide”. Samples were hybridised against a sample with only one variation, resulting in a total of 4 hybridisations (“Wild type vs Mutant”, “Wild type vs Wild type peroxide”, “Mutant vs Mutant peroxide”, and “Wild type peroxide vs Mutant peroxide”). The experiment was performed in duplicate (duplicates are designated A and B) and in order to discriminate the variation between the duplicates additional hybridisation were performed: “Wild type A vs Wild type B” and “Mutant with peroxide A vs Mutant with peroxide B”. This resulted in a total of 10 hybridisations (2 x 4 and 2).

2008-05-08 | E-GEOD-11351 | biostudies-arrayexpress

proteomic analysis of dnaK deletion in Cronobacter sakazakii BAA-894

Project description:The protein profiles of both the dnaK deletion mutant and the wild-type strain were analyzed using proteomic analysis. The dnaK deletion mutant was analyzed three times and the wild-type strain was also analyzed three times.

2023-02-16 | PXD040215 |

Streptococcus pneumoniae

Project description:Wild type vs glnPA double mutant

| PRJNA103825 | ENA

Mus musculus

Project description:Pax6 mutant neocortex vs. wild type

| PRJNA147319 | ENA

Global analysis of polyketide synthase functions in social amoeba

Project description:Transcriptome of PPTase ko mutant vs wild type AX2

| PRJEB89846 | ENA