Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa cultivar:Dongjin

ABSTRACT: Oryza sativa cultivar:Dongjin Raw sequence reads

PROVIDER: PRJNA602982 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11012000_1.fastq.gz	Fastqsanger.gz
	SRR11012000_2.fastq.gz	Fastqsanger.gz
	SRR11012001_1.fastq.gz	Fastqsanger.gz
	SRR11012001_2.fastq.gz	Fastqsanger.gz
	SRR11012002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Oryza sativa cultivar:Dongjin

Project description:Oryza sativa cultivar:Dongjin Raw sequence reads

| PRJNA1115906 | ENA

RNA-seq of Oryza sativa L. Dongjin and Iksan 526 seeds at 20 days after heading

Project description:The resveratrol-producing rice (Oryza sativa L.) inbred line, Iksan 526 (I.526), developed by the expression of the groundnut (Arachis hypogaea) resveratrol synthase 3 (AhRS3) gene in the japonica rice cultivar Dongjin, accumulated both resveratrol and its glucoside, piceid, in leaves and seeds. Especially, ultra-performance liquid chromatography (UPLC) analysis revealed that the biosynthesis of piceid reached peak levels at 20 days after heading (DAH) seeds. To investigate endogenous piceid biosynthesis genes (UGTs), total RNA samples of 20 DAH seeds was used for RNA-seq.

2020-12-20 | E-MTAB-9695 | biostudies-arrayexpress

Oryza sativa cultivar:Dongjin

Project description:Oryza sativa cultivar:Dongjin Transcriptome or Gene expression

| PRJNA427066 | ENA

Oryza sativa strain:Dongjin

Project description:Oryza sativa strain:Dongjin Transcriptome or Gene expression

| PRJNA259819 | ENA

Oryza sativa Japonica cultivar:Kitaake Transcriptome or Gene expression

Project description:RNA-seq of Oryza sativa Japonica cultivar Kitaake

2015-02-11 | E-MTAB-4326 | biostudies-arrayexpress

RNA-Seq of Oryza sativa Dongjin (rice) wild type and gori mutant anthers

Project description:Rice anthers at anthesis stage from the wild type and gori mutant anther (Dongjin cultivar) We collected the sample from our field and immediately froze the samples with liquid nitrogen.

2020-11-03 | E-MTAB-9726 | biostudies-arrayexpress

Screening Salinity Tolerance and Transcriptome Analysis in Rice (Oryza sativa L.)

Project description:Comparative transcriptome sequencing in leaf and root tissues of Control and Salt-treated Oryza sativa generated 52.2 and 17.29 million high-quality reads.

2019-06-05 | GSE132153 | GEO

Expression analysis of genes affected by dehydration-responsive transcription factor Os02g31890 from rice.

Project description:Os02g31890 encodes a dehydration-responsive transcription factor (named ´ARID´) from rice (Oryza sativa, cv. Dongjin). Expression profiling was performed 90 min after the start of dehydration stress in roots of Oryza sativa wild-type plants (cv. Dongjin) and a knock-out (i.e. arid) mutant.

2013-11-30 | GSE42683 | GEO

RNA-Seq analysis of the Oryza sativa Dongjin wild type and far1-1 mutant anthers

Project description:Rice anthers at the anthesis stage were collected from the wild type (Dongjin cultivar) and far1-1 mutant grown in the paddy field located in the KyungHee University. The collected samples were immediately frozen with liquid nitrogen. RNA from these samples was extracted with RNeasy plant mini kit according to the manufacture's documentation.

2022-12-31 | E-MTAB-10106 | biostudies-arrayexpress

Dynamic Profiles of transcriptome in Oryza sativa leaf

Project description:To evaluate the roles of gene regulation in Oryza sativa leaf, dynamic profiles of transcriptome were investigated in Oryza sativa L. spp. indica with different treatments, the aerial tissues of one-month-old plants from four different areas (groups 1–4) were treated with 0, 40 mL of 25% azoxystrobin, 0.01 g of VdAL, or 40 mL of 25% azoxystrobin plus 0.01 g VdAL, respectively.

2018-12-18 | GSE108204 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data