Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum tuberosum strain:Rhizoctonia solani | cultivar:Atlantic

ABSTRACT: Solanum tuberosum strain:Rhizoctonia solani | cultivar:Atlantic Raw sequence reads

PROVIDER: PRJNA624225 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Solanum tuberosum strain:Rhizoctonia solani | cultivar:Atlantic

Project description:Solanum tuberosum strain:Rhizoctonia solani | cultivar:Atlantic Raw sequence reads

| PRJNA627327 | ENA

RNA-Seq of allotetraploid wild potato Solanum acaule and autotetraploid potato Solanum tuberosum cv. Atlantic

Project description:Potato wild relatives (Solanum section Petota) are a source of genetic diversity for improving traits in modern cultivars (S. tuberosum) to meet climate challenges. Potatoes are susceptible to multiple abiotic and biotic stresses and have undergone constant improvement through breeding programs worldwide. The allotetraploid S. acaule Bitter has been used to introgress cold tolerance into potato breeding germplasm. The cold challenged transcriptome of S. acaule was compared with that of autotetraploid S. tuberosum cv. Atlantic, and was found to have fewer differentially expressed genes than the latter. Specifically, subgenome 1 has less downregulated alleles compared to subgenome 2 and S. tuberosum.

2025-05-31 | GSE268611 | GEO

Rhizoctonia solani AG8 infection of wheat seedling roots

Project description:Rhizoctonia solani is a nectrotrophic fungal pathogen that causes billions of dollars of damage to agriculture worldwide and infects a broad host range including wheat, rice, potato and legumes. In this study we identify wheat genes that are differentially expressed in response to the R. solani isolate, AG8-1, using microarray technology. A significant number of wheat genes identified in this screen were involved in ROS production and redox regulation. Levels of ROS species were increased in wheat root tissue following R. solani infection as determined by NBT, DAB and titanium sulphate measurements/stainings. Pathogen/ROS related genes from R. solani were also tested for expression patterns upon wheat infection. TmpL, a R. solani gene homologous to a gene associated with ROS regulation in Alternaria brassicicola, and OAH, a R. solani gene homologous to oxaloacetate acetylhydrolase which has been shown to produce oxalic acid in Sclerotinia sclerotiorum, were highly induced in R.solani when infecting wheat. We speculate that the wheat germin-like protein (GLP) is induced to inactivate the oxalic acid that is produced by the R. solani OAH.

2015-11-04 | GSE74671 | GEO

Differentially expressed genes during the potato-Rhizoctonia solani AG3 interaction

Project description:Differential analysis of the potato-Rhizoctonia solani AG3 interaction. Samples were extracted from R. solani inoculated potato sprouts at two time points. R. solani is one of the most prominent fungal pests of potato and therefore of great economic relevance.

2020-07-28 | E-MTAB-7137 | biostudies-arrayexpress

Solanum tuberosum cultivar:Atlantic

Project description:Solanum tuberosum cultivar:Atlantic Raw sequence reads

| PRJNA495825 | ENA

Expression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1

Project description:Rhizoctonia solani is an economically important soil-borne necrotrophic fungal pathogen, with a broad host range and for which little effective resistance exists in crop plants. Arabidopsis is resistant to the R. solani AG8 isolate but susceptible to R. solani AG2-1. Affymetrix microarray analysis was performed to determine genes that are affected in common and specifically by AG8 and AG2-1.

2013-02-01 | GSE26206 | GEO

Rhizoctonia solani

Project description:Rhizoctonia solani mitogenome Assembly

| PRJNA723546 | ENA

Rhizoctonia solani

Project description:Rhizoctonia solani Genome sequencing

| PRJNA874926 | ENA

Rhizoctonia solani AG8 infection of wheat seedling roots

2015-11-04 | E-GEOD-74671 | biostudies-arrayexpress

Rhizoctonia solani

Project description:Rhizoctonia solani Raw sequence reads

| PRJNA1146221 | ENA