Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 16S rRNA sequencing data of fecal microbiota in lactation dairy cows after rumen transfaunation

PROVIDER: PRJNA628723 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11617700_1.fastq.gz	Fastqsanger.gz
	SRR11617700_2.fastq.gz	Fastqsanger.gz
	SRR11617701_1.fastq.gz	Fastqsanger.gz
	SRR11617701_2.fastq.gz	Fastqsanger.gz
	SRR11617702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 112

Similar Datasets

Project description:16S rRNA sequencing data of rumen microbiota in lactation dairy cows after rumen transfaunation

| PRJNA628724 | ENA

Project description:16S rRNA sequencing data of fecal microbiota in lactation dairy cows during early lactation

| PRJNA628713 | ENA

A comparative mRNA-seq profiling of the liver, rumen villi, mammalian gland and kidney of Holstein dairy cows with high vs normal milk-urea excretion and with low vs normal (control) crude protein intake

Project description:Nitrogen (N) emissions became a huge topic under environmental and nutrient concerns in dairy farming. Nitrogen is metabolized in cows as a consequence of feed crude protein digestion which is either recycled or excreted via urine, faeces and/or milk. In dairy cows differences between cows in N-recycling and N-emissions have been postulated. This study investigated 24 Holstein dairy cows in late lactation. The experimental design comprises two dietary groups (low (LP) vs normal (NP) crude protein) and two groups of milk urea content, high (HMU) vs low (LMU). Transcriptomic profiles of the liver, rumen, mammalian gland and kidney tissues were comparatively assessed by mRNA sequencing.

2024-11-30 | E-MTAB-9901 | biostudies-arrayexpress

Impact of fecal microbiota transplantation (FMT) in 3 days-ABX-treated recipient mice using feces from 6 NSCLC patients at diagnosis.

Project description:This study aimed to analyze changes in gut microbiota composition in mice after transplantation of fecal microbiota (FMT, N = 6) from the feces of NSCLC patients by analyzing fecal content using 16S rRNA sequencing, 10 days after transplantation. Specific-pathogen-free (SPF) mice were used for each experiments (N=4) as controls.

2023-07-01 | E-MTAB-12812 | biostudies-arrayexpress

Transcript profiling in the liver of early-lactating dairy cows fed conjugated linoleic acid

Project description:In the present study, transcript profiling was carried out in the liver samples from wk 5 of lactation in order to identify genes and pathways regulated by rumen-protected CLA during early lactation. The first wks after parturition represent a critical phase in the productive cycle of high-yielding dairy cows because the liver experiences pronounced metabolic and inflammatory stress which increases the risk to develop liver-associated diseases, such as fatty liver and ketosis.

2016-09-28 | GSE87391 | GEO

Raw single-cell RNA sequencing data of adult rumen tissues

Project description:We performed single-cell RNA-sequencing on the rumen epithelium of dairy cows to construct an epithelial single-cell map of the rumen.

2021-10-21 | GSE175652 | GEO

Bos taurus breed:Holstein Friesian

Project description:Rumen and Fecal Microbiota of Dairy Cows

| PRJNA314251 | ENA

High-concentrate feeding upregulates the expression of inflammation-related genes in the ruminal epithelium of dairy cattle

Project description:The objective of this study was to characterize the mRNA expression profile in rumen epithelium from Holstein dairy cows fed high or low concentrate dits.

2016-06-06 | GSE82272 | GEO

Gene expression profiling of PBMCs in dairy cows pre- and post-partum

Project description:The transition to lactation challenges dairy cows metabolically. Immune dysfunction and infectious disease risk is the hallmark of this transition period. Transcriptome data of PBMC shows differentially expressed pathways postpartum. Metabolically stressed cows show upregulation of innate immune pathways and inflammation.

2018-12-04 | GSE118108 | GEO

The effects of a probiotic yeast on the bacterial diversity and population structure in the rumen of cattle.

Project description:SARST-V1 method was used to asses the effect of live yeast on the microbial population of the rumen of cows fed an acidogenic diet 3 cows were used in 3 by 3 latin-square design with 3 periods. In each period animals received either 0.5g/d of yeast, 5g/d of yeast or none. Rumen microbiota was analysed using the SARST-V1 method for each period.

2013-01-01 | E-GEOD-39206 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data