Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: High-throughput sequencing of human osteosarcoma HOS cells by 100 uM capsaicin treated for 24 hours

PROVIDER: PRJNA629456 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11650022_1.fastq.gz	Fastqsanger.gz
	SRR11650022_2.fastq.gz	Fastqsanger.gz
	SRR11650023_1.fastq.gz	Fastqsanger.gz
	SRR11650023_2.fastq.gz	Fastqsanger.gz
	SRR11650024_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Bioinformatics Reveal the Potential Molecular Mechanism of Agrimol B against Osteosarcoma

Project description:In order to study the molecular mechanism of Agrimol B compound in inhibiting osteosarcoma cells, we established HOS cell line and intervened with Agrimol B for 24 hours.

2024-08-04 | GSE218856 | GEO

TGF-beta1 effect on human osteosarcoma cell line MNNG/HOS

Project description:Investigation of whole genome gene expression level changes in human osteosarcoma cell line MNNG/HOS treated by TGF-beta1 for three days (mesophase) and five days (sarcospheres iOSCs), compared to non-treatment cells (residual adherent cells). A three chip study using total RNA cover from three cultures of non-treatment human osteosarcoma cell line MNNG/HOS (residual adherent cells), TGF-beta1 treated three days osteosarcoma cell line MNNG/HOS (mesophase) and TGF-beta1 treated five days osteosarcoma cell line MNNG/HOS ( only collected the suspending sarcospheres iOSCs). Each chip measures the expression level of 45033 genes from osteosarcoma cell line MNNG/HOS.

2012-05-22 | E-GEOD-38133 | biostudies-arrayexpress

The Proteasome Stress Regulon is Controlled by a Pair of NAC Transcription Factors in Arabidopsis

Project description:We report the expression differences between 5DAG Arabidopsis Col-0, rpn10-1, and rpn12a-1 seedlings treated with 100 uM MG132 for 0, 3, or 24 hours.

2016-05-21 | GSE81668 | GEO

Quantitative proteomics of iPSC-RPE from human donors

Project description:In the project “Quantitative proteomics of iPSC-RPE from human donors” label-free quantitative expression proteomics of iPSC-RPE cells derived from the conjunctiva of human donors was performed. Cells were differentiated using standard protocols (PMID: 33292045) and treated for 24 hours with either vehicle (DMSO, Ctrl), 10 uM CA77.1, or 20 mM NH4Cl + 100 uM Leupeptin (N/L), to assess the effect of autophagy modulation on proteome remodeling.

2025-10-01 | PXD051893 | Pride

Effect of Methapyrilene on Rat Primary Hepatocytes.

Project description:This study provides an evaluation of changes in gene expression associated with methapyrilene treatment of rat hepatocytes in vitro. Primary rat hepatocytes were treated for 24 and 48 hours with two doses (3 uM and 100 uM) of methaphyriline and 1% DMSO vehicle control. Five replicates of each treatment were performed. Cells were then extracted and RNA processed for microarray analysis.

2012-08-28 | GSE40347 | GEO

Gene expression after HOS cells treated with DGKZ (diacylglycerol kinase zeta)-silencing by a microarray profiling (Affymetrix)

Project description:DGKZ could promote proliferation and inhibit apoptosis in osteosarcoma,both in vivo and in vitro. To identify downstream molecular mechanism of DGKZ in proliferation of osteosarcoma, we performed a microarray profiling (Affymetrix) in human HOS cells treated with DGKZ knockdown.

2018-06-12 | GSE115590 | GEO

RNA-seq of human gastric cancer cell line AGS treated with Capsaicin against DMSO

Project description:Capsaicin has previously been demonstrated to exhibit anti-tumor effect in various cancer type. However, the deep biological function and molecular mechanism of capsaicin was still uncertain. In this research, we used high-throughput RNA sequencing to unveil the potential biological function of capsaicin in human gastric cancer cell line AGS.Total RNA was collected from AGS cells treated with capsaicin (at a dose of 250uM for 24h) or DMSO using TRIzol reagent according to the manufacturer’s protocol (n=3 per group). RNA was quantified using a NanoDrop ND-2000 (Thermo Scientific, USA), and RNA integrity was assessed using an Agilent Bioanalyzer 2100 (Agilent Technologies, USA). High throughput sequencing was performed by TsingKe biotech Co., Ltd. according to the manufacturers` standard protocols. The quality control and preliminary analysis of sequencing raw data was performed by Novogene biotech Co., Ltd. according to the standard pipeline. Gene expression level was measured by Fragments Per Kilobase of exon model per Million mapped fragments (FPKM).

2024-11-01 | E-MTAB-14511 | biostudies-arrayexpress

Transcriptome of human osteosarcoma (HOS) cells induced by bisphenol A, S and AF

2015-05-28 | GSE50527 | GEO

Gene expression of the A375 melanoma cell line treated with RAF inhibitors Vemurafenib and time-course with EGF stimulation during Vemurafenib RAF inhibitor treatment alone or with the MEK inhibitor Cobimetinib

Project description:We treated for 24 hours the BRAF-V600E melanoma cell line A375 with 7 doses of the RAF inhibitor Vemurafenib and, in a second experimental desing, we treated for 24 hours the BRAF-V600E melanoma cell line A375 with Vemurafenib (1 uM) alone or in combination with the MEK inhibitor Cobimetinib (1 uM) and subsequently stimulated with EGF in a time-course of 7 time points for up to 8 hours (0, 0.5, 1, 2, 3, 4, 8 hours).

2020-10-19 | GSE127988 | GEO

Transcriptome of human osteosarcoma (HOS) cells induced by bisphenol A, S and AF

Project description:Whole genome expression data on transcriptome of human osteosarcoma (HOS) cells induced by bisfenol A (BPA), S (BPAS) and AF (BPAF) after short- (8 hours) and long-term (3 months) exposure at human-relevant (10 nM) concentrations. 8 experimental conditions, 4x2 design: 3 compounds (bisphenol A, S and AF) and a control, 2 exposure times (8 hours and 3 months). 3 replicates for each condition, 24 arrays in total.

2015-05-28 | E-GEOD-50527 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data