Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bacillus subtilis strain:NCIB 3610

ABSTRACT: Transcriptome analysis of Bacillus subtitis mutant (yvmC) in biofilm

PROVIDER: PRJNA630288 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23215121_1.fastq.gz	Fastqsanger.gz
	SRR23215121_2.fastq.gz	Fastqsanger.gz
	SRR23215122_1.fastq.gz	Fastqsanger.gz
	SRR23215122_2.fastq.gz	Fastqsanger.gz
	SRR23215123_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Transcriptome sequencing data analysis of Bacillus subtilis NCIB 3610 wild-type strain, tmRNA mutant strain and MB revertant strain

Project description:In our study, we found that lack of tmRNA affects the biofilm formation in Bacillus subtilis, which has important research significance. Then, we obtained a revertant strain MB from tmRNA mutant strain. And MB strain could restore biofilm production capacity. Therefore, the transcriptomes of the three strains were sequenced. Based on the statistical analysis of gene expression (P < 0.05), there were 756 genes up regulated while 992 genes down regulated by at least two folds when comparing TM to WT. Secondly, there were 974 genes up regulated while 563 genes down regulated by at least two folds when comparing MB to TM. And there were 179 genes up regulated while 307 genes down regulated by at least two folds when comparing MB to WT.

2022-08-03 | GSE199151 | GEO

Complete Genome Sequence of Undomesticated Bacillus subtilis Strain NCIB 3610.

Project description:Bacillus subtilis is a Gram-positive bacterium that serves as an important experimental system. B. subtilis NCIB 3610 is an undomesticated strain that exhibits phenotypes lost from the more common domesticated laboratory strains. Here, we announce the complete genome sequence of DK1042, a genetically competent derivative of NCIB 3610.

| S-EPMC5477328 | biostudies-literature

Transcriptome sequencing data analysis of Bacillus subtilis NCIB 3610 treated with DMSO and AQCA

Project description:In our study, we discovered that AQCA (Anthraquinone-2-carboxylic acid) effectively degrades Bacillus subtilis NCIB 3610 biofilms, a finding of significant research importance. To investigate the underlying mechanisms, we performed transcriptome sequencing of wild-type biofilms treated with either DMSO (control) or AQCA. Statistical analysis of gene expression (P < 0.05) revealed that AQCA treatment led to significant changes: 184 genes were upregulated, while 503 genes were downregulated by at least twofold compared to the DMSO control group.

2025-07-08 | GSE301691 | GEO

Proteomic response of Bacillus subtilis 3610 to nanoparticles exposition

Project description:The natural biotope of Bacillus subtilis is the upper layer of soil where it grows as a biofilm. To mimic this physiological development and study the impact of nanoparticles during the formation of a biofilm in a contaminated soil, we have studied the proteomic response of the ancestral strain Bacillus subtilis 3610, which is able to form biofilm contrary to the 168 laboratory strain. The bacteria were grown on soft agar plates containing n-ZnO, n-TiO2 or ZnSO4 metal ion.

2018-10-24 | PXD006444 | Pride

Bacillus subtilis strain:NCIB 3610

Project description:Bacillus subtilis NCIB 3610

| PRJNA377766 | ENA

Direct Comparison of Physical Properties of Bacillus subtilis NCIB 3610 and B-1 Biofilms.

Project description:Many bacteria form surface-attached communities known as biofilms. Due to the extreme resistance of these bacterial biofilms to antibiotics and mechanical stresses, biofilms are of growing interest not only in microbiology but also in medicine and industry. Previous studies have determined the extracellular polymeric substances present in the matrix of biofilms formed by Bacillus subtilis NCIB 3610. However, studies on the physical properties of biofilms formed by this strain are just emerging. In particular, quantitative data on the contributions of biofilm matrix biopolymers to these physical properties are lacking. Here, we quantitatively investigated three physical properties of B. subtilis NCIB 3610 biofilms: the surface roughness and stiffness and the bulk viscoelasticity of these biofilms. We show how specific biomolecules constituting the biofilm matrix formed by this strain contribute to those biofilm properties. In particular, we demonstrate that the surface roughness and surface elasticity of 1-day-old NCIB 3610 biofilms are strongly affected by the surface layer protein BslA. For a second strain,B. subtilis B-1, which forms biofilms containing mainly γ-polyglutamate, we found significantly different physical biofilm properties that are also differently affected by the commonly used antibacterial agent ethanol. We show that B-1 biofilms are protected from ethanol-induced changes in the biofilm's stiffness and that this protective effect can be transferred to NCIB 3610 biofilms by the sole addition of γ-polyglutamate to growing NCIB 3610 biofilms. Together, our results demonstrate the importance of specific biofilm matrix components for the distinct physical properties of B. subtilis biofilms.

| S-EPMC4959484 | biostudies-literature

Bacillus subtilis strain:NCIB 3610 | isolate:NCIB 3610

Project description:Bacillus subtilis subtilis NCIB 3610 methylation detection - Heat Glucose1 epigenomics

| PRJNA1361681 | ENA

Bacillus subtilis strain:NCIB 3610 | isolate:NCIB 3610

Project description:Bacillus subtilis subtilis NCIB 3610 methylation detection - Heat Malate1 epigenomics

| PRJNA1361475 | ENA

Bacillus subtilis strain:NCIB 3610 | isolate:NCIB 3610

Project description:Bacillus subtilis subtilis NCIB 3610 methylation detection - Cold Malate1 epigenomics

| PRJNA1361469 | ENA

Bacillus subtilis strain:NCIB 3610 | isolate:NCIB 3610

Project description:Bacillus subtilis subtilis NCIB 3610 methylation detection - Naive Malate3 epigenomics