Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next Generation Sequencing Based RNAseq Analysis of lri35-/- mutant zebrafish larvae at 5 dpf

ABSTRACT: Next Generation Sequencing Based RNAseq Analysis of lri35-/- mutant zebrafish larvae at 5 dpf

PROVIDER: PRJNA642221 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12100493_1.fastq.gz	Fastqsanger.gz
	SRR12100493_2.fastq.gz	Fastqsanger.gz
	SRR12100494_1.fastq.gz	Fastqsanger.gz
	SRR12100494_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Next Generation Sequencing Based RNAseq Analysis of lri35-/- mutant zebrafish larvae at 5 dpf

Project description:Gene expression profiles in lri35 mutant zebrafish larvae at 5 dpf based on RNAseq data.

2020-06-27 | GSE153386 | GEO

Next Generation Sequencing Based RNAseq Analysis of lri25-/- mutant zebrafish larvae at 5 dpf.

Project description:Gene expression profiles in lri25 mutant zebrafish larvae at 5 dpf based on the RNAseq data.

2021-08-07 | GSE181602 | GEO

Next Generation Sequencing Based RNAseq Analysis of lri12 (-/-) mutant zebrafish larvae at 5 dpf

Project description:Gene expression profiles in lri12 mutant zebrafish larvae at 5 dpf based on RNAseq data. This dataset was also used to clone the mutation.

2023-05-31 | GSE231283 | GEO

Next Generation Sequencing Based RNAseq Analysis of lri25-/- mutant zebrafish larvae at 5 dpf.

Project description:Next Generation Sequencing Based RNAseq Analysis of lri25-/- mutant zebrafish larvae at 5 dpf.

| PRJNA752641 | ENA

Next Generation Sequencing Based RNAseq Analysis of lri12 (-/-) mutant zebrafish larvae at 5 dpf

Project description:Next Generation Sequencing Based RNAseq Analysis of lri12 (-/-) mutant zebrafish larvae at 5 dpf

| PRJNA963051 | ENA

RNAseq on uhrf1 zebrafish mutant larvae at 5 dpf compared to phenotypically normal siblings

Project description:In this study, we performed RNA-seq on 5 dpf whole larvae of uhrf1-hi272 mutants and phenotypically wild-type siblings to determine changes in the transcriptomic profile.

2020-12-01 | GSE160708 | GEO

Effect of swim-training on caudal fin development in zebrafish larvae

Project description:Genome-wide microarray analysis of the effects of swim-training on caudal fin development in zebrafish larvae. Zebrafish were subjected to swim-training from 5 days post fertilization (dpf) until 10 dpf. Subsequently, we performed a genome-wide microarray analysis on the caudal fins of control and trained fish at 10 dpf. The goal of the project was to investigate the effects of swim-training on the gene expression level during caudal fin development in zebrafish larvae.

2014-07-17 | GSE44395 | GEO

The proteomics effects of HSP60 chaperone deficiency in zebrafish larvae

Project description:To understand the effects of Hsp60 deficiency in developing vertebrates, we generated CRISPR/Cas9-mediated hspd1 knockout zebrafish lines by targeting exon 2 to induce a frameshift mutation. We selected an allele with a 56 base pair deletion inducing a frameshift mutation leading to loss of protein functions. We examined the proteome changes in zebrafish larvae at 5 days post fertilization (DPF). Wildtype control and hspd1-/- larvae at 5dpf, were analyzed by TMT and nanoLC-MS/MS based proteomcis. For this purpose, we studied five pools from each genotype, and each pool consisted of five larvae.

2024-09-27 | PXD048920 | Pride

Transcriptome profiles of liver from 7dpf zebrafish larvae from control, sec31anju221 and double mutation of sec31anju221 and UPR effectors by Next Generation Sequencing

Project description:We found that zebrafish larvae bearing a homozygous hypomorphic mutation in the sec31a gene (sec31anju221) exhibited hepatic steatosis accompanied with activation of unfolded protein response (UPR). As systematic efforts to investigate how different branches of UPR impact on the hepatic metabolic maladaptation, critical effectors of the UPR (xbp1, atf4a/4b, atf6, srebf1 and srebf2) were separately knock-outed on sec31anju221 background. In order to access the changes on transcriptome landscape, livers were dissected from the 7 dpf zebrafish larvae and low input RNA-seq was applied.

2024-01-01 | GSE248098 | GEO

RNAseq on uhrf1 zebrafish mutant larvae at 5 dpf compared to phenotypically normal siblings

Project description:RNAseq on uhrf1 zebrafish mutant larvae at 5 dpf compared to phenotypically normal siblings

| PRJNA674048 | ENA