Project description:tRNA-derived fragments (tRFs) and tRNA halves (tiRNAs) were profiled in serum from human participants with chronic atrophic gastritis (CAG; n=3), early gastric cancer (EGC; n=3), or gastric cancer (GC; n=3). Modification-aware small RNA sequencing generated single-end 50-nucleotide reads. The submission includes nine raw FASTQ files and a complete vendor-annotated tRF/tiRNA feature-by-sample quantitative matrix containing raw counts and CPM values.
Project description:To identify more targets in soybean, particularly specific targets of Cd-stress-responsive miRNAs, high-throughput degradome sequencing was used. In total, we obtained 8913111 raw reads from the library which was constructed from a mixture of four samples (HX3-CK, HX3-Cd-treatment, ZH24-CK and ZH24-Cd-treatment). After removing the reads without the CAGAG adaptor, 5430126 unique raw-reads were obtained. The unique sequences were aligned to the G. max genome database, and 6516276 reads were mapped to the genome. The mapped reads from the libraries represented 51481 annotated G. max genes.
2013-12-20 | GSE50063 | GEO
Project description:The complete chloroplast genome sequences of Camellia luteocalpandria and Camellia connata