Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Alicyclobacillus mali

ABSTRACT: Alicyclobacillus mali FL 18

PROVIDER: PRJNA677860 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR13039949_1.fastq.gz	Fastqsanger.gz
	SRR13039949_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Alicyclobacillus mali (ex Roth et al. 2021)

Project description:Alicyclobacillus mali overview

| PRJNA196541 | ENA

Alicyclobacillus mali NBRC 102425

Project description:Alicyclobacillus mali NBRC 102425 genome sequencing project

| PRJDB1078 | ENA

Adaptive regulation of pathogenic factors by microRNA-like RNA directed mRNA cleavage in plant pathogenic fungus Valsa mali

Project description:MicroRNAs (miRNAs) play important roles by regulating the expression of target genes in plant and animal. However, little known about mechanism of fungal miRNA-like RNAs (milRNAs) regulating target gene restricts their functional exploration. In this study, multiple omics were used to identify the milRNAs and their target genes in a phytopathogenic fungus Valsa mali. Many candidate pathogenic factors were found to be regulated by milRNA-directed cleavage way. Absence or downregulated expression of Vm-milRNAs promote expression of candidate pathogenic factors during V. mali infection. Vm-milR16 is a significantly downregulated milRNA during V. mali infection, resulting in significantly upregulated expression of three target genes: VmSNF1, VmDODA, and VmHy1. Overexpression of Vm-milR16 significantly reduces the pathogenicity of V. mali. And all the three target genes of Vm-milR16 are required for the full pathogenicity of V. mali. Further analysis revealed that VmSNF1 regulates the pathogenicity by affecting the expression of pectinase genes during V. mali infection. And all the three target genes are essential for oxidative stress response during V. mali-host interaction. Vm-milRNAs may help V. mali to intelligently use limited resources and adaptively regulate pathogenicity by enhancing expression of pathogenic factors and fitness during infection.

2019-05-10 | GSE130968 | GEO

Multiple Factors Contribute to Guaiacol Production by Alicyclobacillus acidoterrestris and Alicyclobacillus suci in Apple Juice, as revealed by Transcriptomic and Phenotypic Analyses

Project description:Alicyclobacillus acidoterrestris and Alicyclobacillus suci are both guaiacol producers that can cause spoilage in products like juices. To study the genetic underpinnings of guaiacol production, transcriptomics was performed on multiple strains of A. suci and A. acidoterrestris under guaiacol production conditions in apple juice. While guaiacol production was consistently higher by A. acidoterrestris than by A. suci, the gene expression levels associated with guaiacol production (e.g., vdcC, vdcB, vdcD) showed significant variability across strains of both species, suggesting that other factors beyond vdcC transcription influence the amount of guaiacol produced. This research provides insights for beverage producers in assessing spoilage risks and developing more informed mitigation strategies.

2026-02-14 | GSE313619 | GEO

Gene expression during metabolism of sugars by Alicyclobacillus acidocaldarius

Project description:The purpose of this study was to characterize carbon metabolism and gene regulation in Alicyclobacillus acidocaldarius during growth on monosaccharides in an effort to determine whether carbon catabolite repression was active. Chemostat studies and global transcriptome analysis were used to accomplish this goal.

2016-08-31 | GSE84032 | GEO

MALI

Project description:MALI

| PRJEB55493 | ENA

Gene expression during metabolism of polysaccharides and sugars by Alicyclobacillus acidocaldarius

Project description:The purpose of this study was to characterize carbon metabolism and gene regulation in Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and the effect of pentose and hexose sugars on gene expression Chemostat studies and global transcriptome analysis were used to accomplish this goal.

2017-01-01 | GSE89078 | GEO

LC-MSMS analysis of apple canker pathogen Valsa mali

Project description:In order to explore the role of LaeA in secondary metabolite biosynthetic gene clusters’ regulation, toxin production, and virulence of Valsa mali, TMT-based proteomic analysis of wildtype, LaeA deletion mutant and overexpression mutant were performed. Totally, 4,299 proteins (FDR < 0.01) were identified by searching against the Valsa mali protein sequence database.

2021-09-09 | PXD021783 | Pride

Alicyclobacillus acidiphilus

Project description:Alicyclobacillus acidiphilus overview

| PRJNA179495 | ENA

Alicyclobacillus cycloheptanicus

Project description:Alicyclobacillus cycloheptanicus overview

| PRJNA179496 | ENA