Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bacterial endophytes in rice root of Sundarban, West Bengal

PROVIDER: PRJNA681119 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13171800_1.fastq.gz	Fastqsanger.gz
	SRR13171800_2.fastq.gz	Fastqsanger.gz
	SRR13171801_1.fastq.gz	Fastqsanger.gz
	SRR13171801_2.fastq.gz	Fastqsanger.gz
	SRR13171802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

miRNA Expression Profiles of Premalignant and Malignant Arsenic-Induced Skin Lesions

Project description:Total RNA was purified from keratinocytes isolated from FFPE arsenic-induced skin lesion samples collected from individuals exposed to high concentrations of arsenic exceeding 50 ppb in drinking water in Murshidibad district of West Bengal, India.

2018-06-01 | GSE102892 | GEO

root metagenome (Taxonomy ID: 1118232)

Project description:Bacterial endophytes of rice root from Vindhyan Alluvial zone

| PRJNA471590 | ENA

root metagenome (Taxonomy ID: 1118232)

Project description:Bacterial endophytes of rice root from Northern Hill zone

| PRJNA471599 | ENA

root metagenome (Taxonomy ID: 1118232)

Project description:Bacterial endophytes of rice root from Gangetic alluvial zone

| PRJNA471586 | ENA

root metagenome (Taxonomy ID: 1118232)

Project description:Bacterial endophytes of rice root from Red and laterite zone

| PRJNA471617 | ENA

Project description:Isolation of lignocellulose degrading bacteria from Insect gut and soil of Sundarban, West Bengal, India

| PRJNA890873 | ENA

Project description:Bacterial metataxonomy of agricultural soil sample of North Bengal, West Bengal, India

| PRJNA733696 | ENA

Project description:Bacterial diversity of agricultural soil sample of North Bengal, West Bengal, India

| PRJNA642225 | ENA

Bacteria

Project description:Bacterial endophytes of black rice

| PRJNA416429 | ENA

Whole genome transcriptional analysis in rice-stem during dough stage induced by arsenic contaminated soil and irrigation water

Project description:RNA from stem containing first node and internodes during dough stage was considered for the above purpose. Satabdi, (popularly known as Minikit) most popular cultivar of West Bengal and Palman, another high yielding variety were considered for microarray analysis for comparison to each other. Two rice genotypes were grown in identical conditions (same field with contaminated ground water) to obtain the most meaningful conclusion. Dough stage was considered as variation in arsenic accumulation among the genotypes starts during dough stage to maturity. Plant tissues were collected from stem for transcriptomic analysis as expression profiling of such tissue in response to arsenic would be most useful as arsenic transport/loading in grain was assumed to be controlled by arsenic translocation behavior at inter vascular level or from xylem to phloem. Satabdi accumulates more than twice of arsenic in brown rice (0.346 mg/kg) than that of Palman (0.156 mg/kg) whereas accumulation in straw (2.07 mg/kg) was approximately less than half of the Palman (4.491 mg/kg)

2014-01-17 | E-MTAB-2106 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data