Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: lake Baikal (Siberia, Russia) sediments, amplicon sequencing

PROVIDER: PRJNA686851 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR13348943_1.fastq.gz	Fastqsanger.gz
	SRR13348943_2.fastq.gz	Fastqsanger.gz
	SRR13348944_1.fastq.gz	Fastqsanger.gz
	SRR13348944_2.fastq.gz	Fastqsanger.gz
	SRR13348945_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

Project description:lake Baikal (Siberia, Russia) sediments, Shotgun Metagenomics

| PRJNA703749 | ENA

Proteome of mature flatworm Triaenophorus crassus (Bothriocephalidea:Triaenophoridae) from pike Esox lucius

Project description:Adult pike Esox lucius was caught in the end of summer (August, 2020) in Teletskoye Lake (Altai region, west Siberia, Russia, 51°79’10’’ N, 87°30’43’’E). Parasite (Triaenophorus crassus) was retrieved from the intestine of pike and immediately frozen in liquid nitrogen. After that, the sample was lyophilized and sent in ice (-20 °C) to the Group of mass spectrometry of Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS (Moscow, Russia) where further analysis was performed.

2021-10-28 | PXD028112 | Pride

Comparative transcriptomics as a key to understanding the adaptation mechanisms of Baikal sculpins to the deep-water habitat

Project description:In this study, the transcriptional profiles of four deep-sea sculpin fish species (Cottoidei) are described for the first time as part of the study of the adaptation of endemic fishes to different habitats in Lake Baikal. These studies will lead to a deeper understanding of the molecular mechanisms that ensure the adaptation of endemic species to specific habitats in Lake Baikal, even at depths of more than 500 m (up to 1600 m).

2025-10-30 | GSE308109 | GEO

Proteomic analysis of sulfur-respiring haloarchaea from hypersaline lakes

Project description:Dimitry Y. Sorokin et al., (2021, Russian Academy of Sciences, Russia and Delft University of Technology, The Netherlands) describe the isolation and physiological and genomic properties of a fifth functional group of sulfur-respiring haloarchaea enriched from hypersaline lake sediments with CO as the electron donor. Additional shotgun proteomic profiling of the described strains has been performed.

2022-12-25 | PXD028241 | Pride

Prussian carp skin mucus proteomics

Project description:Here we provide dataset from a proteomic experiment, using trypsin digestion, and reversed-phase chromatography (RPC) with tandem mass spectrometr (RPC-MS/MS), in order to relatively quantify the protein composition of skin mucus of Prussian carp Carassius gibelio. The main aim of the project is to identify the proteins specifically assotiated with fish inhabits euthophic shallow lakes lake Chany Lake (West Siberia).

2021-05-27 | PXD025974 | Pride

Project description:Microbial metagenome of sediments, ZelenSeep, Lake Baikal

| PRJNA1372947 | ENA

Project description:Surface Diatom Sediments of Deep Freshwater Lake Baikal

| PRJNA419998 | ENA

Project description:16S/18S metabarcoding raw sequence reads - freshwater lake Baikal (Russia).

| PRJNA637453 | ENA

Putative carotenoid-binding proteins from the hemolymph of endemic Lake Baikal amphipod Eulimnogammarus cyaneus and E. vittatus

Project description:Color is an important trait in nature, playing a role in selection and speciation. The most important colorants in crustaceans are carotenoids, which in complexes with carotenoid-binding proteins provide an astonishing variety of colors from red to violet. Over 350 species and subspecies of amphipods (Crustacea: Amphipoda) endemic to Lake Baikal exhibit an impressive variability of colors and coloration patterns. However, the mechanisms forming this diversity are underexplored. In this work, we analyze the coloration of two species of endemic Lake Baikal amphipods, Eulimnogammarus cyaneus and E. vittatus. These species are brightly colored and, even more importantly, characterized by intraspecific color variability. We showed that the color of either species strongly correlated with the abundance of two putative carotenoid-binding proteins (the relative abundance of these proteins was higher in blue or teal-colored animals than in the orange- or yellow-colored ones.). With LC-MS/MS, we were able to identifiy these proteins, which turned out to be similar to the pheromone/odorant-binding protein family.

2020-06-04 | PXD018516 | Pride

Plant sedDNA metabarcoding from lake surface sediments

Project description:Plant sedDNA metabarcoding from lake surface sediments in Yakutia, Eastern Siberia

| PRJEB89990 | ENA