Ontology highlight
ABSTRACT:
PROVIDER: PRJNA689863 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR13363735_1.fastq.gz | Fastqsanger.gz | |||
| SRR13363735_2.fastq.gz | Fastqsanger.gz | |||
| SRR13363736_1.fastq.gz | Fastqsanger.gz | |||
| SRR13363736_2.fastq.gz | Fastqsanger.gz | |||
| SRR13363737_1.fastq.gz | Fastqsanger.gz |
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Similar Datasets
Project description:This study was designed to identify the sRNAs in Aphis gossypii (cotton-melon aphid) during Vat-mediated resistance in teraction with melon
2013-06-01 | GSE38641 | GEO
Project description:The cotton - melon aphid Aphis gossypii is an extremely polyphagous sap feeding insect which infests more than 900 crops worldwide and posing a severe threat to farmers. The salivary proteins acts as interface between aphid and their host plant.However, the cotton aphid salivary proteome was not studied yet. Identifying the salivary proteins helps in better understanding of aphid adaptation to their host plant which aids us to search for novel plant genetic source.
2024-09-09 | PXD045238 | JPOST Repository
Project description:This is the flux balance model from:
A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola.
Thomas GH, Zucker J, Macdonald SJ, Sorokin A, Goryanin I, Douglas AE.: BMC Syst Biol.
2009 Feb
21;3(1):24. pubmedID: 19232131
, doi: 10.1186/1752-0509-3-24
Abstract:
Background:
In silico analyses provide valuable insight into the biology of obligately intracellular pathogens and symbionts with small genomes. There is a particular opportunity to apply systems level tools developed for the model bacterium Escherichia coli to study the evolution and function of symbiotic bacteria which are metabolically specialised to overproduce specific nutrients for their host and, remarkably, have a gene complement that is asubset ofthe E. coli genome.
Results:
We have reconstructed and analysed the metabolic network of the gamma-proteobacterium Buchnera aphidicola (symbiont of the pea aphid) as a model for using systems-level approaches to discover key traits of symbionts with small genomes. The metabolic network is extremely fragile with >90 % of thereactions essential for viability in silico; and it is structured so that the bacterium cannot grow without producing the essential amino acid, histidine, which is released to the insect host. Further, the amount of essential amino acid produced by the bacterium in silico can be controlledby host supply of carbon and nitrogen substrates.
Conclusions:
This systems-level analysis predicts that the fragility of the bacterial metabolic network renders the symbiotic bacterium intolerant of drastic environmental fluctuations, while the coupling of histidine production to growth prevents the bacterium from exploiting host nutrients without reciprocating. These metabolic traits underpin the sustained nutritional contribution of B. aphidicola to the host and, together with the impact of host-derived substrates on the profile of nutrients released from the bacteria, point to a dominant role of the host in controlling the symbiosis. Systems level analysis of other taxa will establish the generality of these traits among symbiotic bacteria with reduced genomes.
This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication
for more information.
In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not..
To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.
2005-01-01 | MODEL7434234848 | BioModels
Project description:The cotton-melon aphid, Aphis gossypii Glover, is a major insect pest worldwide. Lysiphlebia japonica (Ashmead) is an obligate parasitic wasp of A. gossypii, and has the ability to regulate lipid metabolism of the cotton-melon aphid. Lipids are known to play critical roles in energy homeostasis, membrane structure, and signaling. However, the parasitoid genes that regulate fat metabolism and lipid composition in aphids are not known. 34 glycerolipids and 248 glycerophospholipids were identified in this study. We have shown that a 3-day parasitism of aphids can induce significant changes in the content and acyl chain composition of triacylglycerols (TAGs) and subspecies composition of glycerophospholipids content and acyl chains. It also upregulate the expression of several genes involved in triacylglycerol synthesis and glycerophospholipid metabolism. Pathway analysis showed that a higher expression of genes involved in the tricarboxylic acid cycle and glycolysis pathways may contribute to TAGs synthesis in parasitized aphids. Interestingly, the higher expression of genes in the sphingomyelin pathway and reduced sphingomyelin content may be related to the reproductive ability of A. gossypii. We provide a comprehensive resource describing the molecular signature of parasitized A. gossypii particularly the changes associated with the lipid metabolism and discuss the biological and ecological significance of this change.
2018-03-07 | MTBLS410 | MetaboLights