Pterygoplichthys disjunctivus
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ABSTRACT:
PROVIDER: PRJNA69499 | ENA |
REPOSITORIES: ENA
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Project description:Pterygoplichthys pardalis overview
| PRJNA1165882 | ENA
Project description:Pterygoplichthys pardalis Genome sequencing
| PRJNA1165483 | ENA
Project description:Pterygoplichthys disjunctivus Chromosome-level genome
| PRJEB108908 | ENA
Project description:Pterygoplichthys disjunctivus isolate:lyr Genome sequencing
| PRJNA1430112 | ENA
Project description:In this study, we report the complete mitochondrial genome of Pterygoplichthys pardalis has derived by next-generation sequencing. The complete mitochondrial genome of P. pardalis contains 16,425 bp encompassing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one control region (D-loop). The base composition is A 31.79%, C 26.89%, G 14.63%, and T 26.69%, and its gene arrangement is consistent with mitochondrial genomes derived from other representatives of Loricariidae. A phylogenetic tree of 24 Loricariidae species constructed based on the 13 coding genes shows that P. pardalis is clustered with other Pterygoplichthys genus. It suggests that the molecular classification results confirm its external morphological characteristics. These results have reference value for the further study of phylogenetic relationship, taxonomic classification, and phylogeography of Loricariidae.
| S-EPMC8530479 | biostudies-literature
Project description:Pterygoplichthys pardalis is an armored catfish native to South America and an important resource for the ornamental fish industry. Recently, several exotic populations have been introduced into rivers on five continents. Despite its commercial and environmental importance, P. pardalis is poorly studied from a genetic perspective. In this study, we analyzed the karyotype of P. pardalis from the Amazon River and molecular variations in the mitochondrial gene Cytochrome oxidase I (COI) between native and exotic populations. The karyotype presented diploid number 2n = 52 and NF = 100 without cytogenetic variation between males and females. Nucleolus organizer regions (Ag-NOR) in the distal region of the long arm of pair 12 coincided with the 18S hybridization signal, whereas 5S was syntenic to this chromosome but localized in the short arm. The constitutive heterochromatin was restricted in the distal regions of pairs 4, 12, 25, and 26. Telomeric probes showed only distal hybridization signals. The karyotype of P. pardalis diverged from that of its congeners, and COI molecular variation revealed four haplotypes. The Philippine population revealed the greatest diversity with three haplotypes, while haplotype H1 was the most abundant and observed in both native and exotic populations. This new genetic data contributes to species management and provides useful information from an aquaculture perspective.
| S-EPMC10177225 | biostudies-literature
Project description:Pterygoplichthys is a genus of related suckermouth armoured catfishes native to South America, which have invaded tropical and subtropical regions worldwide. Physiological features, including an augmented resistance to organic xenobiotics, may have aided their settlement in foreign habitats. The liver transcriptome of Pterygoplichthys anisitsi was sequenced and used to characterize the diversity of mRNAs potentially involved in the responses to natural and anthropogenic chemicals. In total, 66,642 transcripts were assembled. Among the identified defensome genes, cytochromes P450 (CYP) were the most abundant, followed by sulfotransferases (SULT), nuclear receptors (NR) and ATP binding cassette transporters (ABC). A novel expansion in the CYP2Y subfamily was identified, as well as an independent expansion of the CYP2AAs. Two expansions were also observed among SULT1. Thirty-two transcripts were classified into twelve subfamilies of NR, while 21 encoded ABC transporters. The diversity of defensome transcripts sequenced herein could contribute to this species' resistance to organic xenobiotics.
| S-EPMC5310677 | biostudies-literature
Project description:Intraspecific variation in stoichiometric traits was thought to be an adaptive response to reduce the elemental imbalance between organism and diet in the habitat. Studying the spatial variation of stoichiometric traits of non-native species and the factors contributing to the variation could help to better understand the invasion mechanism of non-native fish. In this study, stoichiometric traits (i.e. carbon [C], phosphorus [P], calcium [Ca] and their ratios) variation in the body and organs of non-native sailfin catfishes Pterygoplichthys spp. were investigated across 13 river sections in the main river basins of Guangdong province. The relationships between environmental factors and stoichiometric traits were analyzed using a general linear model and an information-theoretic approach. A manipulated feeding experiment was conducted to investigate the impact of food quality on the stoichiometry of sailfin catfishes in a greenhouse. Sailfin catfishes exhibited considerable variability in body and organ elemental composition. Site identity was the main factor contributing to the variation, which could be explained by a combination of environmental factors including climate, diet quality, fish species richness and trophic status in the invaded rivers. Water chemistry (i.e. total nitrogen and phosphorus, ammonia nitrogen and soluble reactive phosphorus) contributed to the most variation of stoichiometric traits. Imbalances of P and Ca between sailfin catfishes and food resources varied among sampling sites, reflecting the spatial heterogeneity of nutrients limitation. Juvenile sailfin catfishes exhibited stoichiometric homeostasis (0 < 1/H < 0.25) for all elemental contents and ratios in the feeding experiment. These findings suggested variation in stoichiometric traits of sailfin catfishes might be attributed to the changes in elemental metabolism to cope with context-specific environments. This study provided heuristic knowledge about environmental-related variation in stoichiometric traits, which could enhance the understanding of the non-native species' adaptation to resource fluctuation in the invaded ecosystems.
| S-EPMC9636514 | biostudies-literature
Project description:An overview of small RNAs sequences existing in seed development and contrasted with vegetative tissues of the soybean
2012-10-09 | GSE36728 | GEO