Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

7 dpf RNA Sequencing - Zebrafish FASD Model

ABSTRACT: 7 dpf RNA Sequencing - Zebrafish FASD Model

PROVIDER: PRJNA722026 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR14240233.fastq.gz	Fastqsanger.gz
	SRR14240234.fastq.gz	Fastqsanger.gz
	SRR14240235.fastq.gz	Fastqsanger.gz
	SRR14240236.fastq.gz	Fastqsanger.gz
	SRR14240237.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

RNA Sequencing - Zebrafish FASD Model

Project description:RNA Sequencing - Zebrafish FASD Model

| PRJNA596534 | ENA

7 dpf RNA Sequencing - Zebrafish FASD Model

Project description:Purpose: The transcriptional alterations underlying physiological changes in fetal alcohol spectrum disorder are largely unidentified. Here we perform RNA sequencing on 0% and 1% EtOH (12 hpf - 5 dpf) zebrafish at 7dpf stages in order to identify significant transcriptional alterations.

2022-09-01 | GSE172111 | GEO

RNA Sequencing - Zebrafish FASD Model

Project description:Purpose: The transcriptional alterations underlying physological changes in fetal alcohol spectrum disorder are largely unidentified. Here we perform RNA sequencing on control and embryonic alcohol exposed (EAE/FAE) zebrafish at larval (13 dpf) and adult stages in order to identify significant transcriptional alterations under normal and HFHC diet conditions.

2020-12-01 | GSE142311 | GEO

Next Generation Sequencing Based RNAseq Analysis of lri35-/- mutant zebrafish larvae at 5 dpf

Project description:Gene expression profiles in lri35 mutant zebrafish larvae at 5 dpf based on RNAseq data.

2020-06-27 | GSE153386 | GEO

Next Generation Sequencing Based RNAseq Analysis of lri25-/- mutant zebrafish larvae at 5 dpf.

Project description:Gene expression profiles in lri25 mutant zebrafish larvae at 5 dpf based on the RNAseq data.

2021-08-07 | GSE181602 | GEO

Next Generation Sequencing Based RNAseq Analysis of lri12 (-/-) mutant zebrafish larvae at 5 dpf

Project description:Gene expression profiles in lri12 mutant zebrafish larvae at 5 dpf based on RNAseq data. This dataset was also used to clone the mutation.

2023-05-31 | GSE231283 | GEO

Single-cell RNA sequencing of lck-GFP transgenic zebrafish

Project description:The present study was conducted in the frame of the EU-funded Graphene Flagship project. The aim is to evaluate the impact of graphene oxide (GO) on the (innate) immune system using zebrafish as a model. We previously performed single-cell RNA-sequencing of germ-free zebrafish embryos exposed to GO plus the microbial metabolite butyrate (BA). Here, we performed a follow up experiment using germ-free lck-GFP transgenic fish in which the zebrafish were exposed to GO plus BA at 5 dpf. The embryos were then dissociated and subsequently sorted on lck and submitted for single-cell RNA-sequencing using 10x Genomics.

2022-07-23 | E-MTAB-11991 | biostudies-arrayexpress

Transcriptomic profiling of Tg(fabp10a:hUHRF1-EGFP)high zebrafish livers and control siblings at 5 dpf

Project description:Overexpression of high levels of human UHRF1 tagged with EGFP (hUHRF1-EGFP)high in zebrafish hepatocytes induces cellular senescence by 5 days post fertilization (dpf) and hepatocellular carcinoma by 15-20 dpf. The goal of this study is to compare the transcriptome profile of zebrafish livers with (hUHRF1-EGFP)high overexpression compared to WT siblings. RNAseq was performed on RNA extracted from pools of microdissected liveres by using RiboZero libary prep to capture all transcripts, including transposable elements, that are expressed in the livers.

2023-03-21 | GSE227735 | GEO

RNA-seq of microglia from 3-dpf siblings, mafba and mafbb single mutant and DMut zebrafish

Project description:In order to search for the downstream target genes of Mafba and Mafbb, we isolated microglia (3 cells per sample) from 3-dpf zebrafish brain of siblings, mafba and mafbb single mutants and DMut under Tg(mpeg1:DsRedx) transgenic background (3 samples per genotype), respectively, and then performed RNA sequencing.

2022-09-20 | GSE213126 | GEO

Proteomics analysis of zebrafish spinal cord regeneration

Project description:Label-free mass spectrometry-based quantitative proteomics was applied to a larval zebrafish spinal cord injury model, which allows axon regeneration and functional recovery within two days (days post lesion; dpl) after a spinal cord transection in 3 day-old larvae (dpf). Proteomic profiling of the lesion site was performed at 1 dpl and 2 dpl as well as corresponding age-matched unlesioned control tissue (4 dpf as control for 1 dpl; 5 dpf as control for 2 dpl).

2023-09-06 | PXD037590 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data