Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Salivary microbiome

PROVIDER: PRJNA744583 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR15067400_1.fastq.gz	Fastqsanger.gz
	SRR15067400_2.fastq.gz	Fastqsanger.gz
	SRR15067401_1.fastq.gz	Fastqsanger.gz
	SRR15067401_2.fastq.gz	Fastqsanger.gz
	SRR15067402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 128

Similar Datasets

Analysis of human and microbial salivary proteomes in children offers insights on the molecular pathogenesis of molar-incisor hypomineralization

Project description:The current study aims to characterize the salivary proteome (host proteome and microbiome) in children with MIH, to discover salivary markers indicative of the pathology.

2022-09-15 | PXD035780 | Pride

Free-Flow Isoelectric Focusing Based Metaproteomics Workflow Facilitates the Identification and Characterization of Human Salivary Microbiome for Lung Cancer

Project description:We developed a free-flow isoelectric focusing (FFIEF) based metaproteomics workflow to reduce the host interferences and enrich the low-abundant bacteria for better interpretation of salivary microbiome. We firstly tested the pretreatment module that could significantly reduce the host interferences by differential centrifugation and filtration. Then the FFIEF module was applied to separate the microbes and enrich the low-abundant bacteria, which showed a significant improvement in the identification efficiency of microbiome sample. Applying our method to lung cancer, we successfully identified Fusobacterium, Neisseriaceae, Actinomycetaceae, Burkholderiales, and Spirochaetia were associated with lung cancer as previous sequencing studies did, along with other 16 significantly different species. The dysregulated functions in lung cancer microbiome were also explained in details. Our workflow provides improved efficiency in identification and characterization of the salivary microbiome with great reproducibility. The ability of enriching low-abundant bacteria and functions enables in-deep analysis of previously underestimated information.

2022-11-17 | PXD026727 | Pride

Saliva

Project description:Qatari salivary microbiome

| PRJNA781451 | ENA

Project description:Salivary microbiome and hyperglycaemia

| PRJNA807496 | ENA

Project description:Human salivary microbiome data

| PRJNA991632 | ENA

Changes in intestinal permeability and gut microbiota following diet-induced weight loss in patients with metabolic dysfunction-associated steatohepatitis and liver fibrosis

Project description:We explore whether a low-energy diet intervention for Metabolic dysfunction-associated steatohepatitis (MASH) improves liver disease by means of modulating the gut microbiome. 16 individuals were given a low-energy diet (880 kcal, consisting of bars, soups, and shakes) for 12 weeks, followed by a stepped re-introduction to whole for an additional 12 weeks. Stool samples were obtained at 0, 12, and 24 weeks for microbiome analysis. Fecal microbiome were measured using 16S rRNA gene sequencing. Positive control (Zymo DNA standard D6305) and negative control (PBS extraction) were included in the sequencing. We found that low-energy diet improved MASH disease without lasting alterations to the gut microbiome.

2024-12-31 | E-MTAB-14061 | biostudies-arrayexpress

Free-Flow Isoelectric Focusing for Comprehensive Separation and Analysis of Human Salivary Microbiome for Lung Cancer

Project description:Human microbiome contains billions of microorganisms that play important roles in the biological system and different diseases. Due to its complexity, conventional culture-independent technology may underestimate the value of low-abundance bacteria, which calls for a highly efficient method for its enrichment and comprehensive analysis. In this study, we developed a recycling free-flow isoelectric focusing (RFFIEF) method-based electrophoresis method to separate salivary microbiome.

2021-03-10 | PXD024619 |

Project description:the salivary microbiome in children

| PRJNA700472 | ENA

Project description:Salivary microbiome sequencing of astronauts

| PRJNA539937 | ENA

Project description:Salivary microbiome of periodontitis patients

| PRJNA1293413 | ENA