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Single-cell RNA sequencing of Medicago truncatula roots after exposure to Ensifer meliloti (formerly Sinorhizobium meliloti)

ABSTRACT: Single-cell RNA sequencing of Medicago truncatula roots after exposure to Ensifer meliloti (formerly Sinorhizobium meliloti)

PROVIDER: PRJNA756538 | ENA |

REPOSITORIES: ENA

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Single-cell RNA sequencing of Medicago truncatula roots after exposure to Ensifer meliloti (formerly Sinorhizobium meliloti)

Project description:Single-cell RNA sequencing of Medicago truncatula roots was generated from nuclei using the 10X Genomics' Chromium technology. Roots were harvested and processed 24h after exposure to Ensifer meliloti (formerly Sinorhizobium meliloti).

2025-08-01 | GSE182507 | GEO

Expression data of Medicago truncatula skl1-1 roots treated with S. meliloti wild-type or auxin transport inhibitors

Project description:Rhizobium and allied bacteria form symbiotic nitrogen-fixing nodules on legume roots. Plant hormones appear to play a role in nodule formation. We treated Medicago truncatula roots with auxin transport inhibitors (ATIs) N-(1-naphthyl)phthalamic acid (NPA) and 2,3,5-triiodobenzoic acid (TIBA) to induce the formation of pseudonodules. We compared the transcriptional responses of M. truncatula roots treated with ATIs to roots inoculated with Sinorhizobium meliloti. The transcriptional response of M. truncatula roots 1 and 7 days after ATI treatment were opposite to roots treated with S. meliloti.

2011-03-26 | GSE28172 | GEO

Expression data of Medicago truncatula Jemalong A17 roots treated with S. meliloti exoA mutant or auxin transport inhibitors

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Expression data from Medicago truncatula roots treated with S. meliloti wild-type or exoA mutant bacteria, or auxin transport inhibitors

Project description:Publication title: Pseudonodule formation by wild type and symbiotic mutant Medicago truncatula in response to auxin transport inhibitors This SuperSeries is composed of the following subset Series: GSE27991: Expression data of Medicago truncatula Jemalong A17 roots treated with auxin transport inhibitors GSE28171: Expression data of Medicago truncatula Jemalong A17 roots treated with S. meliloti exoA mutant or auxin transport inhibitors GSE28172: Expression data of Medicago truncatula skl1-1 roots treated with S. meliloti wild-type or auxin transport inhibitors GSE28173: Genes differentially expressed in wild-type Medicago truncatula plants during nodulation Refer to individual Series

2011-03-25 | E-GEOD-28174 | biostudies-arrayexpress

Responses in Medicago truncatula to Sinorhizobium meliloti wild type or the succinoglycan-deficient exoY mutant.

Project description:For transcript analysis of responses in Medicago truncatula to its symbiont Sinorhizobium meliloti wild type or the succinoglycan-deficient exoY mutant we compared transcripts from line A17 roots inoculated with 25 mL OD = 0.05 S. meliloti wild type or exoY mutant. Keywords: 1 line; 2 S. meliloti samples

2007-07-24 | GSE8509 | GEO

Expression data of Medicago truncatula Jemalong A17 roots treated with auxin transport inhibitors

2011-03-26 | GSE27991 | GEO

Expression data of Medicago truncatula Jemalong A17 roots treated with S. meliloti exoA mutant or auxin transport inhibitors

2011-03-25 | E-GEOD-28171 | biostudies-arrayexpress

Expression data of Medicago truncatula skl1-1 roots treated with S. meliloti wild-type or auxin transport inhibitors

2011-03-25 | E-GEOD-28172 | biostudies-arrayexpress

Rhizobial and non/mycorrhizal Medicago truncatula roots and shoots transcriptome

Project description:Plant species posses a special set of genes functional only in arbuscular mycorrhizal symbiosis. So, the model plant Medicago truncatula (Jemalong 5) was used for transcriptome comparative analysis while infected with compatible rhizobia Sinorhizobium meliloti (strain 10) and with or without arbuscular mycorrhizal fungus Rhizophagus irregularis (SYM5). Whole shoot and whole root were used for RNA isolation and processed via one of the European certified Affymetrix core labs (http://core.img.cas.cz).

2019-04-21 | GSE126833 | GEO

Transcription profiling of Medicago truncatula treated with Sinorhizobium meliloti Nodulation factors at 6 and 48 h time points

Project description:This experiment studies the effect of purified Sinorhizobium meliloti Nodulation factors (Nod-factors, NF) on gene expression in the model legume Medicago truncatula.

2007-03-31 | E-MEXP-943 | biostudies-arrayexpress

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