The transcription factor Cdx2 regulates inflammasome activity through expression of the NLRP3 suppressor TRIM31 to maintain intestinal homeostasis
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ABSTRACT:
PROVIDER: PRJNA768777 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR16204412.fastq.gz | Fastqsanger.gz | |||
| SRR16204413.fastq.gz | Fastqsanger.gz | |||
| SRR16204414.fastq.gz | Fastqsanger.gz | |||
| SRR16204415.fastq.gz | Fastqsanger.gz | |||
| SRR16204416.fastq.gz | Fastqsanger.gz |
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Project description:We report differentially expressed genes due to Cdx loss in mouse large intestinal tissue using RNA-seq. We report Cdx2 binding sites and chromatin accessibilty for target genes occupied by Cdx2 in mouse large intestinal tissue using ChIP-seq and ATAC-seq.
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Project description:The NLRP3 inflammasome, a pivotal component of innate immunity, has been implicated in various inflammatory disorders. The ubiquitin-editing enzyme A20 is well known to regulate inflammation and maintain homeostasis. However, the precise molecular mechanisms by which A20 modulates the NLRP3 inflammasome remain poorly understood. Here our study revealed that macrophages deficient in A20 exhibit increased protein abundance and elevated mRNA level of NIMA-related kinase 7 (NEK7). Importantly, A20 directly binds with NEK7, mediating its K48-linked ubiquitination, thereby targeting NEK7 for proteasomal degradation. Our results demonstrate that A20 enhance the ubiquitination of NEK7 at K189 and K293 ubiquitinated sites, with K189 playing a crucial role in the binding of NEK7 to A20, albeit not significantly influencing the interaction between NEK7 and NLRP3. Furthermore, A20 disrupts the association of NEK7 with the NLRP3 complex, potentially through the OTU domain and/or synergistic effect of ZnF4 and ZnF7 motifs. Significantly, NEK7 deletion markedly attenuates the activation of the NLRP3 inflammasome in A20-deficient conditions, both in vitro and in vivo. This study uncovers a new mechanism by which A20 inhibits the NLRP3 inflammasome.
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