Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fusarium pseudograminearum strain:WZ-8A

ABSTRACT: Fusarium pseudograminearum strain:WZ-8A Transcriptome or Gene expression

PROVIDER: PRJNA776550 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR16706415_1.fastq.gz	Fastqsanger.gz
	SRR16706415_2.fastq.gz	Fastqsanger.gz
	SRR16706416_1.fastq.gz	Fastqsanger.gz
	SRR16706416_2.fastq.gz	Fastqsanger.gz
	SRR16706417_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Fusarium pseudograminearum strain:WZ-8A

Project description:Fusarium pseudograminearum strain:WZ-8A Transcriptome or Gene expression

| PRJNA772598 | ENA

Fusarium pseudograminearum strain:WZ-8A

Project description:Transcriptome Response of Fusarium pseudograminearum WZ-8A to Bacillus velezensis YB-185.

| PRJNA772688 | ENA

Fusarium pseudograminearum isolate:WZ-8A | cultivar:Aikang 58

Project description:Fusarium pseudograminearum isolate:WZ-8A | cultivar:Aikang 58 Raw sequence reads

| PRJNA885612 | ENA

TMT-based quantitative proteomic analysis reveals defense mechanism of wheat against the crown rot pathogen Fusarium pseudograminearum

Project description:Abstract Background: Fusarium crown rot is major disease in wheat. However, the wheat defense mechanisms against this disease remain poorly understood. Results: Using tandem mass tag (TMT) quantitative proteomics, we evaluated a disease-susceptible (UC1110) and a disease-tolerant (PI610750) wheat cultivar inoculated with Fusarium pseudograminearum WZ-8A. The morphological and physiological results showed that the average root diameter and malondialdehyde content in the roots of PI610750 decreased 3 days post-inoculation (dpi), while the average number of root tips increased. Root vigor was significantly increased in both cultivars, indicating that the morphological, physiological, and biochemical responses of the roots to disease differed between the two cultivars. TMT analysis showed that 366 differentially expressed proteins (DEPs) were identified by Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment in the two comparison groups, UC1110_3dpi/UC1110_0dpi (163) and PI610750_3dpi/PI610750_0dpi (203). It may be concluded that phenylpropanoid biosynthesis (8), secondary metabolite biosynthesis (12), linolenic acid metabolites (5), glutathione metabolism (8), plant hormone signal transduction (3), MAPK signaling pathway-plant (4), and photosynthesis (12) contributed to the defense mechanisms in wheat. Protein-protein interaction network analysis showed that the DEPs interacted in both sugar metabolism and photosynthesis pathways. Sixteen genes were validated by real-time quantitative polymerase chain reaction and were found to be consistent with the proteomics data. Conclusion: The results provided insight into the molecular mechanisms of the interaction between wheat and F. pseudograminearum.

2021-01-04 | PXD023314 | Pride

Transcription profiling of wheat response to infection by Fusarium pseudograminearum

Project description:Crown rot of wheat, caused by Fusarium pseudograminearum and other Fusarium species is an important disease globally. To understand the host response to challenge by Fp, we examined gene exression changes in the stem base of the wheat variety Kennedy, following inoculation with macroconidia using the Affymetrix GeneChip Wheat Genome Array. Induced genes included mainly those with defensive functions such as genes encoding anti-microbial proteins as well as oxidative stress-related proteins, signalling molecules, and proteins involved in both primary and secondary metabolism. This study is the first comprehensive analysis of the wheat transcriptome during crown rot infection and provides new insights into the host processes involved in plant defence against this pathogen. Experiment Overall Design: There are six samples, three F. pseudograminearum inoculated samples and three mock inoculated samples. Each sample consists of 2cm of stem base from approximately 20 plants.

2009-01-14 | E-GEOD-13660 | biostudies-arrayexpress

Fusarium pseudograminearum

Project description:Fusarium pseudograminearum Transcriptome or Gene expression

| PRJNA998924 | ENA

Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

2009-01-01 | GSE13660 | GEO

Fusarium pseudograminearum

Project description:Fusarium pseudograminearum Raw sequence reads

| PRJNA1260158 | ENA

Fusarium pseudograminearum

Project description:Fusarium pseudograminearum Raw sequence reads

| PRJNA306180 | ENA