Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Functional profiling of marine microbial eukaryotes in northwestern Philippines

PROVIDER: PRJNA788625 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17224010_1.fastq.gz	Fastqsanger.gz
	SRR17224010_2.fastq.gz	Fastqsanger.gz
	SRR17224011_1.fastq.gz	Fastqsanger.gz
	SRR17224011_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Project description:Diversity of marine eukaryotic phytoplankton communities in northwestern Philippines

| PRJNA656691 | ENA

Project description:Symbiodiniaceae Community Profiling of Three Acropora Coral Species from northwestern Philippines

| PRJNA1295142 | ENA

Project description:Marine eukaryotes

| PRJNA1348143 | ENA

Billefjorden metatranscriptome

Project description:Marine metatranscriptome from Arctic microbial eukaryotes

| PRJEB18992 | ENA

GeoChip 5 microarray data to determine gene activity in microbially influenced corrosion and associated samples from Shoreham Harbour, U.K.

Project description:Samples collect to investigate the gene activity from microbial populations in marine steel corrosion, and to compare with gene activity in water and bed sediment samples from the surrounding area. The study was undertaken to (1) investigate mechanisms of microbially influenced corrosion (MIC) of marine steel, and (2) compare microbial population gene activity between corrosion and the surrounding environment. Purified DNA (1µg) was labelled with Cy3, purified and hybridised at 42°C for 16h with the GeoChipTM 5.0 on a MAUI hybridisation station (BioMicro, USA).

2019-11-01 | E-MTAB-8364 | biostudies-arrayexpress

Acidification alters the composition of ammonia oxidizing microbial assemblages in marine mesocosms

Project description:Increasing atmospheric CO2 concentrations are causing decreased pH over vast expanses of the ocean. This decreasing pH may alter biogeochemical cycling of carbon and nitrogen via the microbial process of nitrification, a key process that couples these cycles in the ocean, but which is often sensitive to acidic conditions. Recent reports indicate a decrease in oceanic nitrification rates under experimentally lowered pH. How composition and abundance of ammonia oxidizing bacteria (AOB) and archaea (AOA) assemblages respond to decreasing oceanic pH, however, is unknown. We sampled microbes from two different acidification experiments and used a combination of qPCR and functional gene microarrays for the ammonia monooxygenase gene (amoA) to assess how acidification alters the structure of ammonia oxidizer assemblages. We show that despite widely different experimental conditions, acidification consistently altered the community composition of AOB by increasing the relative abundance of taxa related to the Nitrosomonas ureae clade. In one experiment this increase was sufficient to cause an increase in the overall abundance of AOB. There were no systematic shifts in the community structure or abundance of AOA in either experiment. These different responses to acidification underscore the important role of microbial community structure in the resiliency of marine ecosystems. SUBMITTER_CITATION: Title: Acidification alters the composition of ammonia oxidizing microbial assemblages in marine mesocosms Journal: Marine Ecology Progress Series Issue: 492 Pages: 1-8 DOI: 10.3354/meps 10526 Authors: Jennifer L Bowen Patrick J Kearns Michael Holcomb Bess B Ward

2013-08-27 | GSE49956 | GEO

marine sediment metagenome

Project description:Microbial eukaryotes

| PRJNA244592 | ENA

Development and application of a microarray for assessing gene transcription in open ocean microbial communities.

Project description:A high-density oligonucleotide microarray that targets functional genes in marine microbial community was designed as a result of a multi-institutional effort. The design is based on nucleotide sequence data obtained with metagenomics and metatranscriptomics. The chip targets ~20000 gene sequences represented by 145 gene categories relevant to microbial metabolism in the open ocean and coastal environments. The three domains of life and also viruses are represented on the chip. Using this microarray we were able to compare the functional responses of microbial communities to iron and phosphate enrichments in samples from the North Pacific Subtropical Gyre. The response was attributed to individual lineages of microorganisms including uncharacterized strains. Transcription of 68% of the gene probes was detected from a variety of microorganisms, and the patterns of gene transcription indicated a relief from iron limitation and transition into nitrogen limitation. When combined with physicochemical descriptions of each system, the use of microarrays can help to develop a comprehensive understanding of the changes in microbially-driven processes. We analyzed three samples amended with phosphate and two sample amended with iron (III) after 48h of incubation

2013-03-07 | E-GEOD-44448 | biostudies-arrayexpress

marine metagenome

Project description:Marine eukaryotes Targeted loci environmental

| PRJNA283296 | ENA

BBD_BEH_BGY_BGZ_BHA_BRR_BRW_BRX_BRY

Project description:Collection of Marine Eukaryotes Transcriptomes

| PRJEB34158 | ENA