Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Effects of berberine hydrochloride on intestinal microflora and related molecules of Charybdis japonica infected with Aeromonas hydrophila

PROVIDER: PRJNA804319 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR17930800_1.fastq.gz	Fastqsanger.gz
	SRR17930800_2.fastq.gz	Fastqsanger.gz
	SRR17930801_1.fastq.gz	Fastqsanger.gz
	SRR17930801_2.fastq.gz	Fastqsanger.gz
	SRR17930802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

Project description:Effects of berberine hydrochloride on immune response in the crab Charybdis japonica

| PRJNA819826 | ENA

Aeromonas hydrophila whole cell differential proteins

Project description:Differential protein of Aeromonas hydrophila(putative human infections)'s whole cell protein

2022-01-13 | PXD029702 | Pride

Time-resolved and multi-tissue RNAseq provided new insights on the immune responses of European eels following infection with Aeromonas hydrophila

Project description:No studies systematically compared time-resolved and multi-tissue innate immune responses for European eels (Anguilla anguilla) with Aeromonas hydrophila infection through a high throughput method. Here, we challenged European eels with A. hydrophila (infected) or PBS (control). A low fatality rate (16.1%) was observed for infected group at 2 days post-infection (dpi). Then we examined transcriptional profiles of intestines, livers and spleens from 12 European eels with/without the infection of A. hydrophila at 6, 18 and 36 hours post-infection (hpi). The results showed that the most differentially expressed genes (DEGs) were found in the spleens at 6 hpi (7569 DEGs), followed by the intestines at 6 hpi (3129 DEGs) and the livers at 18 hpi (2722 DEGs). Only a few DEGs were found in three tissues at 36 hpi. The comparisons for DEGs numbers and KEGG enrichments suggested a consistent time-course immune responses among these three tissues. A similar enrichment of PRRs-related pathways including TLRs, NLRs and RLRs was revealed in the livers and spleens, but not in the intestines. Among immune-related DEGs, 62 paralogues pairs were found, and the expression trends of most paralogues pairs were consistent. Some paralogues of immune-related DEGs had unique domains. Furthermore, a larger clusters representing the similar tissue were revealed for the intestines and spleens. The distinct cytokine signal transduction and interaction existed between the livers and spleens. Altogether, the present study provides time-resolved and multi-tissue transcriptome characteristics of A. anguilla in response to A. hydrophila infection.

2024-11-01 | GSE188550 | GEO

Expressed sequences and polymorphisms in rohu carp (Labeo rohita, Hamilton) revealed by mRNA-seq

Project description:An integrated approach was used to identify genes associated with resistance to Aeromonas hydrophila, an important bacterial pathogen causing aeromoniasis in rohu Labeo rohita. DNA polymorphism and gene expression profiling in lines of L. rohita selected for resistance or susceptibility to challenge with A. hydrophila, and grown in a common environment, were studied using Illumina mRNA-seq of selectively pooled RNA samples.

2013-01-01 | GSE27994 | GEO

Aeromonas hydrophila LC-MSMS - This project was designed to observe changes in proteins expression and toxicity proteins expression of Aeromonas hydrophila under normal and iron restriction conditions.

Project description:This project was designed to observe changes in proteins expression and toxicity proteins expression of Aeromonas hydrophila under normal and iron restriction conditions.

2018-02-16 | PXD007641 | Pride

Expressed sequences and polymorphisms in rohu carp (Labeo rohita, Hamilton) revealed by mRNA-seq

2013-01-01 | E-GEOD-27994 | biostudies-arrayexpress

Project description:Aeromonas hydrophila infected Pelodiscus sinensis

| PRJNA1060677 | ENA

Transcription profiling of C. elegans exposed to several different bacterial pathogens

Project description:Transcritome study of C.elegans exposed to multiple, different bacterial pathogens. Experiments were performed in set-replicates of either 3 or 5.<br> There are 3 for samples: Aeromonas hydrophila, Enterococcus faecalis, Erwinia carotovora and Photorhabdus luminescens. <br> There are 5 for samples: Serratia marcesens and Escherichia coli (control).<br>

2008-02-06 | E-MEXP-766 | biostudies-arrayexpress

Project description:Charybdis japonica resequencing

| PRJNA1150402 | ENA

Charybdis japonica

Project description:Charybdis japonica overview

| PRJNA391533 | ENA