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Psophocarpus tetragonolobus isolate:single seed descent | cultivar:Ma

ABSTRACT: whole genome sequencing of winged bean (Psophocarpus tetragonolobus)

PROVIDER: PRJNA808222 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR18079787_1.fastq.gz	Fastqsanger.gz
	SRR18079787_2.fastq.gz	Fastqsanger.gz
	SRR18079788_1.fastq.gz	Fastqsanger.gz

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2012-03-22 | GSE28477 | GEO

Project description:Comprehensive Genomic Characterization of Winged Bean (Psophocarpus tetragonolobus)

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Expression data from mouse skin

Project description:Winged bean (WB), Psophocarpus tetragonolobus, is a tropical legume, the potential of which is not yet been understood. We found that a 5 week-oral administration of WB seed extract inhibited wrinkle formation induced by repeated tape stripping (TS), which is a model of lichenification in human chronic eczematous dermatitis. To elucidate mechanism of the effect of WB on this model, we applied microarray analysis. Skin barrier was disrupted by repeated application and removal (tape stripping; TS) of cellophane tape on the dorsal skin of the left side. This procedure was started after 1 week-administration of winged bean (WB) extract, and was conducted 3 times per week for 4 weeks. Dorsal skin samples from three experimental groups were used for microarray experiment. These groups were the non-TS (NT), TS, and TS with oral administration of WB extract (TS/WB). The DNA microarray experiment was performed using Affymetrix Mouse Genome 430 2.0 Array.

2012-03-22 | E-GEOD-28477 | biostudies-arrayexpress

Project description:A genomic toolkit for the soybean of the tropics winged bean (Psophocarpus tetragonolobus)

| PRJNA1034490 | ENA

A genomic toolkit for winged bean Psophocarpus tetragonolobus.

Project description:A sustainable supply of plant protein is critical for future generations and needs to be achieved while reducing green house gas emissions from agriculture and increasing agricultural resilience in the face of climate volatility. Agricultural diversification with more nutrient-rich and stress tolerant crops could provide the solution. However, this is often hampered by the limited availability of genomic resources and the lack of understanding of the genetic structure of breeding germplasm and the inheritance of important traits. One such crop with potential is winged bean (Psophocarpus tetragonolobus), a high seed protein tropical legume which has been termed 'the soybean for the tropics'. Here, we present a chromosome level winged bean genome assembly, an investigation of the genetic diversity of 130 worldwide accessions, together with two linked genetic maps and a trait QTL analysis (and expression studies) for regions of the genome with desirable ideotype traits for breeding, namely architecture, protein content and phytonutrients.

| S-EPMC10907731 | biostudies-literature

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