Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Samples collected in Yellow Sea

PROVIDER: PRJNA835313 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19143823_1.fastq.gz	Fastqsanger.gz
	SRR19143823_2.fastq.gz	Fastqsanger.gz
	SRR19143824_1.fastq.gz	Fastqsanger.gz
	SRR19143824_2.fastq.gz	Fastqsanger.gz
	SRR19143825_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 88

Similar Datasets

E-MTAB-8090

Project description:RNA-seq of Drosophila melanogaster haemocytes with and without injury. Samples collected 1h post injury.

2019-08-08 | E-MTAB-8090 | ExpressionAtlas

Methylation studies in yellow-bellied marmots

Project description:An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from blood samples from yellow-bellied marmots (Marmota flaviventris). DNA methylation data from n=159 blood samples. All samples were collected as part of a long-term study of a free-living population of yellow-bellied marmots in the Gunnison National Forest, Colorado (USA), where marmots were captured and blood samples collected biweekly during the their active season (May to August). Genomic DNA was extracted with Qiagen DNeasy blood and tissue kit.

2022-04-13 | GSE174544 | GEO

Transcript profiling of Mungbean yellow mosaic India virus (MYMIV) infected Glycine max

Project description:Transcript profiling of control vs Mungbean yellow mosaic India virus infected Glycine max variety JS335. RNA samples were collected at 2 dpi to study change in transcript profile at early infection.

2015-03-01 | GSE41052 | GEO

Project description:Analysis of Musilage samples collected from Marmara Sea

| PRJNA759896 | ENA

E-PROT-62

Project description:Quantitative proteomics of human heart samples collected in vivo reveal the remodeled protein landscape of dilated left atrium without atrial fibrillation.

2022-01-10 | E-PROT-62 | ExpressionAtlas

Keratinocytes Drive the Epithelial Hyperplasia Key to Sea Lice Resistance in Coho Salmon

Project description:Background: Salmonid species have followed markedly divergent evolutionary trajectories in their interactions with sea lice. While sea lice parasitism poses significant economic, environmental, and animal welfare challenges for Atlantic salmon (Salmo salar) aquaculture, coho salmon (Oncorhynchus kisutch) exhibit near-complete resistance to sea lice, achieved through a potent epithelial hyperplasia response leading to rapid louse detachment. The molecular mechanisms underlying these divergent responses to sea lice are unknown. Results: We characterised the cellular and molecular responses of Atlantic salmon and coho salmon to sea lice using single-nuclei RNA sequencing. Juvenile fish were exposed to copepodid sea lice (Lepeophtheirus salmonis), and lice-attached pelvic fin and skin samples were collected 12h, 24h, 36h, 48h, and 60h after exposure, along with control samples. Comparative analysis of control and treatment samples revealed an immune and wound-healing response that was common to both species, but attenuated in Atlantic salmon, potentially reflecting greater sea louse immunomodulation. Our results revealed unique but complementary roles of three layers of keratinocytes in the epithelial hyperplasia response leading to rapid sea lice rejection in coho salmon. Our results suggest that basal keratinocytes direct the expansion and mobility of intermediate and, especially, superficial keratinocytes, which eventually encapsulate the parasite. Conclusions: Our results highlight the key role of keratinocytes in coho salmon’s sea lice resistance, and the diverged biological response of the two salmonid host species when interacting with this parasite. This study has identified key pathways and candidate genes that could be manipulated using various biotechnological solutions to improve Atlantic salmon sea lice resistance.

2024-06-24 | GSE269132 | GEO

E-GEOD-19743

Project description:Gene expression of blood samples from pediatric and adult patients with severe burns collected at an early and middle stage after injury.

2025-01-24 | E-GEOD-19743 | ExpressionAtlas

Project description:Sea surface microlayer samples collected from the Florida Keys

| PRJNA543057 | ENA

Project description:Yellow Sea 2016

| PRJNA481624 | ENA

Gene Catalogue of Airborne Microbiota (GCAM)

Project description:Functional metagenomic analysis of airborne samples collected near Red Sea.

| PRJEB31563 | ENA