Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vibrio

ABSTRACT: Vibrio spp. isolates from raw shrimp imported to Canada

PROVIDER: PRJNA843723 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR19513300_1.fastq.gz	Fastqsanger.gz
	SRR19513300_2.fastq.gz	Fastqsanger.gz
	SRR19513301_1.fastq.gz	Fastqsanger.gz
	SRR19513301_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 185

Similar Datasets

Vibrio

Project description:Vibrio parahaemolyticus, Vibrio cholerae, and Vibrio spp Genome sequencing and assembly of food isolates from imported shrimp

| PRJNA764599 | ENA

Vibrio

Project description:Vibrio spp. isolated from domestic/imported retail mollusk samples collected in Canada between 2014 and 2018

| PRJNA843722 | ENA

California Vibrio cholerae CGH

Project description:Environmental isolates of Vibrio cholerae from California coastal water compared to reference strain N16961. A genotyping experiment design type classifies an individual or group of individuals on the basis of alleles, haplotypes, SNP's. Keywords: genotyping_design; array CGH

2007-07-17 | GSE8499 | GEO

Shrimp transcriptome analysis after exposure to recombinant Vibrio parahaemolyticus PirA and PirB toxins

Project description:Vibrio parahaemolyticus is a Gram-negative bacterium commonly found in marine and estuarine environments. Acute hepatopancreatic necrosis disease (AHPND) caused by this bacterium is an ongoing problem among shrimp farming industries. V. parahaemolyticus proteins PirA and PirB have been determined to be major virulence factors that induce AHPND. In this study, Pacific white shrimp (Litopenaeus vannamei) were challenged with recombinant PirA and PirB by a reverse gavage method and then at 30 m, 1, 2, 4, and 6 h time points, the hepatopancreas of five individual shrimp were removed and placed into RNA later. We conducted RNA sequencing of the hepatopancreas samples from a no PirA/B control (n = 5) and PirA/B-treated shrimp at the different time intervals (n=5). We evaluated the different gene expression patterns between the time groups to the control with a focus on identifying differences in innate immune function.

2023-05-05 | GSE200137 | GEO

Vibrio

Project description:PulseNet Canada Vibrio spp. whole genome sequencing

| PRJNA563071 | ENA

Proteomic analysis of Balneola and Vibrio isolates

Project description:Proteome profile of Balneola and Vibrio isolates established by next-generation proteomics

2022-05-20 | PXD031583 | Pride

Vibrio

Project description:Vibrio spp.

| PRJNA616123 | ENA

A coordinated attack by a bacterial secretion system and a small molecule drives prey specificity

Project description:Vibrio species are recognized for their role in food- and water-borne diseases in humans, fish, and aquatic invertebrates. We screened bacterial strains isolated from raw food shrimp for those that are bactericidal to Vibrio strains. Here we identify and characterize Aeromonas dhakensis strain A603 which shows robust bactericidal activity specifically towards Vibrio and related taxa but less potency toward other Gram-negative species. Using the A603 genome and genetic analysis, we show that two antibacterial mechanisms account for its vibriocidal activity -- a highly potent Type Six Secretion System (T6SS) and biosynthesis of a vibriocidal phenazine-like small molecule, named here as Ad-Phen. Further analysis indicates coregulation between Ad-Phen and a pore-forming T6SS effector TseC, which potentiates V. cholerae to killing by Ad-Phen.

2024-07-05 | GSE270023 | GEO

Comparative genomic hybridization of Vibrio cholerae from California coastal water compared to reference strain N16961

Project description:Environmental isolates of Vibrio cholerae from California coastal water compared to reference strain N16961.

2007-05-23 | E-SMDB-4063 | biostudies-arrayexpress

Vibrio parahaemolyticus

Project description:Whole DNA of Vibrio spp from farming shrimp with Nanopore sequencing Technology

| PRJNA980916 | ENA