Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome Sequence Comparative Analysis of Wild-Type and Mutant Rice

PROVIDER: PRJNA861136 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR20396308_1.fastq.gz	Fastqsanger.gz
	SRR20396308_2.fastq.gz	Fastqsanger.gz
	SRR20396309_1.fastq.gz	Fastqsanger.gz
	SRR20396309_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Project description:Comparative transcriptomic analysis of a bHLH mutant with wild-type rice

| PRJNA803314 | ENA

Microarray comparative analysis of wild-type and hd1-3 mutant rice

Project description:Microarray comparative analysis of wild-type and hd1-3 mutant rice

| PRJNA699148 | ENA

Expression profiling of small RNAs in wild type and Osaba1-1 rice seedlings

Project description:We aimed to identify putative ABA-regulated miRNAs expressed in rice by using a deep sequencing approach developed by Solexa (Illumina). Two small RNA libraries were constructed from Osaba1-1 and wild type rice leaves, and more than ten million small RNA sequence reads were generated for each library. We identified 13 ABA-regulated miRNAs via expression profiling of the miRNAs based on a comparative miRNAomic analysis in combination with experimental validation. To the best of our knowledge, this is the first report of a systematic investigation of ABA-regulated miRNAs and their targets in rice.

2015-05-31 | GSE63367 | GEO

Oryza sativa Japonica Group strain:Nipponbare

Project description:Comparative analysis of transformed and wild-type rice genome.

| PRJDB3395 | ENA

Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13

Project description:To reveal the underlying molecular mechanism of jasmonate inhibits gibberellins signaling in rice, we performed transcriptional profiling of wild type nipponbare and mutant coi1-13 plants on a global scale using the Affymetrix GeneChip Rice Genome Array

2011-12-01 | GSE29577 | GEO

NSF 20K Oligo Arrays to Dissect Rice Defense Response Pathways

Project description:With the availability of a high quality draft rice genome sequence, large mutant collections, and gene expression oligo arrays for rice, we are now well positioned to dissect rice defense pathways. To do this, we performed global expression analyses to identify genes that are differentially expressed in 10 mutant lines (i.e., Xa21, NH1ox, NRR1ox, GR978, spl11, spl17, NBS2-PI9ox, MPK5ox, OsCoi1ox, and OsNahG1ox), exhibiting altered defense responses. As controls, we used wild typle varieties same with these mutants. Keywords: disease response

2008-05-10 | GSE9653 | GEO

NSF 20K Oligo Arrays to Dissect Rice Defense Response Pathways

2008-05-10 | E-GEOD-9653 | biostudies-arrayexpress

Next Generation Sequencing facilitating quantitative analysis of Wild Type and osbzip47dsRNAi transcriptome

Project description:Purpose: The goals of this study is to compare NGS-derived inflorescence transcriptome profiling (RNA-seq) between wild type and transgenic rice line #14 silenced for endogenous OsbZIP47 gene through RNA interference Methods: mRNA profiles of tissue pool from 0.1-0.5 cm inflorscences of wild-type (WT) and osbzip47dsRNAi transgenic line #14 were generated by sequencing, in duplicate, using Illumina HiSeq. The sequence reads that passed quality filters were analyzed at the transcript level with STAR2 aligner followed by featureCounts and edgeR Results: we mapped about 30 million sequence reads per sample to the rice genome (RAP Database) and identified 29532 expressed genes

2022-04-20 | GSE196747 | GEO

Project description:Whole genome sequencing Wild type of mutant rice variety

| PRJNA869445 | ENA

Agilent 44K Rice Oligo DNA Microarray RAP-DB (G2519F#15241); genome-wide transcriptional analysis of Aluminum-responsive genes in rice (Oryza sativa).

Project description:By comparing transcriptional profiling between a wild-type rice and an Al-sensitive rice mutant star1, we found that rice possesses novel mechanisms of Al-tolerance in addition to ART1-regulated mechanism in rice.

2012-09-19 | GSE40964 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data