Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bulked segregant RNA-Seq of WYMV-resistant or WYMV-susceptible pools

PROVIDER: PRJNA896512 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22266305_1.fastq.gz	Fastqsanger.gz
	SRR22266305_2.fastq.gz	Fastqsanger.gz
	SRR22266306_1.fastq.gz	Fastqsanger.gz
	SRR22266306_2.fastq.gz	Fastqsanger.gz
	SRR22266307_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Project description:RNA-seq for bulked segregant analysis

| PRJNA881645 | ENA

Project description:Bulked Segregant RNA -Sequencing

| PRJNA437573 | ENA

Transcription profiling of parental lines and bulked salt sensitive and salt tolerant RILs derived from 2 rice varieties

Project description:The aim of this study was to minimize the number of candidate genes responsible for salt tolerance between a pair of rice varieties (CSR27 and MI48) with contrasting level of salt tolerance by bulked segregant analysis of their recombinant inbred lines. Microarray analysis of RNA extracted from the tolerant and susceptible parents without and with stress showed 798 and 2407 differentially expressed genes, respectively. The number of differentially expressed genes was drastically reduced to 70 and 30, by pooling the RNAs from ten extreme tolerant and ten extreme susceptible RILs due to normalization of irrelevant differentially expressed genes between the parents.

2010-04-20 | GSE16108 | GEO

Transcription profiling of parental lines and bulked salt sensitive and salt tolerant RILs derived from 2 rice varieties

2010-04-28 | E-GEOD-16108 | biostudies-arrayexpress

Project description:Bulked Segregant analysi

| PRJNA793028 | ENA

Expression data from different photosynthetic rate in Populus.

Project description:Despite the significance of nucleus genes in plant growth and development, little is known of the molecular bases of regulation of photosynthesis in woody plants.Hence discovering the genetic basis for photosynthesis related phenotypic variation and identifying the major genes controlling these complex traits in trees is essential. Combining the microarray technique and bulked segregant analysis strategy, we used poplar as a model to detect the nucleus genes differentially expressed in segregation population of photosynthesis traits. We measured the F1 interspecific population and segregated the stable extrem samples into two groups including three pools containing five incividuals.Use the Affymetrix poplar gene chip to decrypt the gene functions and mechanisms in different photosynthetic rate.

2014-05-31 | GSE47105 | GEO

Gene expression profiling reveals potential breast cancer prevention mechanisms associated with the rat Mcs5a allele (DGE)

Project description:Using global gene expression profiling in T-cells from untreated Mcs5a resistant and susceptible congenic rats, we asked if signatures of potential risk-decreasing mechanisms could be identified. On two independent sample sets, we applied microarray (MA) or digital gene expression (DGE) analysis comparing T-cells from Mcs5a resistant and susceptible congenic rats. This file contains the DGE data. T-cell RNA sample pools were compared between the susceptible (susc.; n=3 pools) and the resistant (Mcs5a; n=3 pools) congenic lines

2011-11-29 | E-GEOD-33975 | biostudies-arrayexpress

Neurospora crassa

Project description:Neurospora crassa bulked segregant analysis

| PRJNA301736 | ENA

Arachis hypogaea

Project description:RAD-Seq and bulked segregant analysis by sequencing

| PRJDB6727 | ENA

Identification of candidate genes affecting juvenile wood stiffness in Pinus radiata

Project description:Wood stiffness is the most important wood quality trait of forest trees for structural timber production. We investigated genes differentially transcribed in radiate pine trees with distinct wood stiffness using bulked segregant analysis (BSA) and cDNA microarrays. Transcript accumulation in earlywood (EW) and latewood (LW) of high (HS) and low stiffness (LS) trees in two progeny trials was compared.

2011-06-01 | GSE23020 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data