Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hyaloperonospora parasitica strain:BJ2020

ABSTRACT: Hyaloperonospora parasitica strain:BJ2020 Genome sequencing and assembly

PROVIDER: PRJNA907175 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR25381333_1.fastq.gz	Fastqsanger.gz
	SRR25381333_2.fastq.gz	Fastqsanger.gz
	SRR25381334_1.fastq.gz	Fastqsanger.gz
	SRR25381334_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Transcriptome changes triggered by Hyaloperonospora parasitica arabidopsis Noco2 in WT and wrky72 mutants at 96 hpt

Project description:Functional characterization of AtWRKY72 using Arabidopsis T-DNA insertion lines showed that this gene is important for basal defense to root-knot nematode (RKN) and Hyaloperonospora parasitica arabidopsis (Hpa), but not several tested R gene-mediated defenses.To profile transcriptional reprogramming associated with AtWRKY72-dependent basal defense we used Affymetrix ATH1 GeneChips representing ~24,000 Arabidopsis genes. Three independent biological replicates were performed with Col-0, wrky72-1 and wrky72-2 plants at 96 hpt with HpaNoco2 or mock treatment. Using a false discovery rate of less than 0.05 we identified for each of these three lines genes that showed significant transcriptional changes in response to HpaNoco2 compared to the mock-treated controls. Identification of downstream targets of WRKY72 in Arabidopsis by this microarray suggests that WRKY72 uses a unique signaling pathway that involves AP2/ERF TFs independent of the ethylene signaling pathway. We intended to identify Arabidopsis genes that are regulated in WRKY72-dependent manner in response to Hyaloperonospora parasitica arabidopsis (Hpa) at 96 hpt. For this, we used Col-0 and two wrky72 mutant lines and compared the differentially expressed genes with the hypothesis ‘genes that are specifically regulated in Col-0 but not in wrky72 mutants are WRKY72-dependent genes’.

2010-08-09 | E-GEOD-18329 | biostudies-arrayexpress

Transcription profiling of different Arabidopsis genotypes in a time series after infection with Hyaloperonospora parasitica isolates

Project description:Global transcript profiles of different Arabidopsis thaliana genotypes were examined at 0h, 12h, 24h or 48h post infection with one of three different isolates (races) of the oomycete pathogen Hyaloperonospora parasitica (Hp). The three different isolates of Hp were used for this study, were HpEmoy2, HpHiks1 and HpEmco5 (see Eulgem et al., 2004, Plant Physiol. 135: 1129-1144 for more information). Experimental parameters varied in this study were Arabidopsis genotype, Hp isolate and time after infection.

2007-01-29 | E-TABM-96 | biostudies-arrayexpress

Transcriptome changes triggered by Hyaloperonospora parasitica arabidopsis Noco2 in WT and wrky72 mutants at 96 hpt

2010-08-09 | GSE18329 | GEO

Cryphonectria parasitica strain:ES15

Project description:Cryphonectria parasitica strain:ES15 Genome sequencing and assembly

| PRJNA700518 | ENA

Hyaloperonospora arabidopsidis strain:Waco9

Project description:Hyaloperonospora arabidopsidis Waco9 Genome sequencing

| PRJNA241331 | ENA

Hyaloperonospora arabidopsidis isolate:Noks1

Project description:Hyaloperonospora arabidopsidis isolate:Noks1 Genome sequencing and assembly

| PRJNA298674 | ENA

Hyaloperonospora arabidopsidis isolate:Cala2

Project description:Hyaloperonospora arabidopsidis isolate:Cala2 Genome sequencing and assembly

| PRJNA297499 | ENA

Cryphonectria parasitica

Project description:Cryphonectria parasitica Genome sequencing

| PRJNA657707 | ENA

Cryphonectria parasitica

Project description:Cryphonectria parasitica Genome sequencing

| PRJNA242261 | ENA

Arabidopsis thaliana/Hyaloperonospora arabidopsidis compatible interaction transcriptome

Project description:We used Arabidopsis full-genome microarrays to characterize plant transcript accumulations at different stages of infection with the biotrophic oomycete downy mildew pathogen, Hyaloperonospora arabidopsidis : initiation (< 1 dpi) and maintenance of infection (> 4 dpi).

2010-03-26 | GSE21076 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data