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Bre1-mediated Set2 protein degradation promotes chronological aging in budding yeast [RNA-seq]

ABSTRACT: Bre1-mediated Set2 protein degradation promotes chronological aging in budding yeast [RNA-seq]

PROVIDER: PRJNA912608 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR22746581_1.fastq.gz	Fastqsanger.gz
	SRR22746581_2.fastq.gz	Fastqsanger.gz
	SRR22746582_1.fastq.gz	Fastqsanger.gz
	SRR22746582_2.fastq.gz	Fastqsanger.gz
	SRR22746583_1.fastq.gz	Fastqsanger.gz

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Bre1-mediated Set2 protein degradation promotes chronological aging in budding yeast [RNA-seq]

Project description:Histone modification affects life span in various organisms. The loss of Histone H3K36 methylation can shorten replicative life span in Saccharomyces cerevisiae. However, budding yeast, as a model organism for aging research, has replicative life span (RLS) and chronological life span (CLS). In this study, we showed that the loss of Histone H3K36 methylation can shorten CLS in Saccharomyces cerevisiae. We identified Ubc3/Bre1 mediates polyubiquitination of Set2 K25 and K530 at log phase and stationary phase, and Bre1 interacts with Ubc3 and Rad6 simultaneously. BRE1 knockout can stabilize Set2 protein to maintain H3K36me3 and regulate the transcription of aging related genes, such as DSE1/DSE2/SUN4/EGT2/SCW11. We also proved that Gcn5-mediated Set2 acetylation regulates Set2 protein stability and chronological aging. Altogether, our study showed that knockout of BRE1 and GCN5 regulate Set2 protein level by mediating the polyubiquitination of Set2 to influence the level of H3K36me3 and the transcription level of aging related genes enriched by H3K36me3, thereby extending the chronological life span.

2023-09-29 | GSE221025 | GEO

Bre1-mediated Set2 protein degradation promotes chronological aging in budding yeast [ChIP-seq]

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Bre1-mediated Set2 protein degradation promotes chronological aging in budding yeast [ChIP-seq]

Project description:Bre1-mediated Set2 protein degradation promotes chronological aging in budding yeast [ChIP-seq]

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Gcn5- and Bre1-mediated Set2 degradation promotes chronological aging of Saccharomyces cerevisiae

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Histone H4 acetylation in wild-type, ASF1, SET2 and ASF1 SET2 deletion yeast strains

Project description:ChIP-on chip assays to measure the change in histone acetylation over the yeast genome, in ASF1, SET2 and ASF1 SET2 deletion yeast strains compared to the wild-type control. ChIPs of AcH4 from wild-type, ASF1, SET2 and ASF1 SET2 deletion yeast strains were normalized to the H3 enrichment.

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Project description:ChIP-on chip assays to measure the change in histone acetylation over the yeast genome, in a SET2 deleted strain compared to the wild-type control. ChIPs of H3K9ac, H3K56ac and H4K12ac from wild-type and SET2 deleted cells were normalized to the H3 enrichment.

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2009-09-10 | GSE17871 | GEO

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