Similar Datasets
Project description:Merluccius gayi Genome sequencing and assembly
| PRJNA760491 | ENA
Project description:Calyptocephallela gayi isolate:Jose_Grau Targeted Locus (Loci)
| PRJNA338585 | ENA
Project description:Emerging infectious diseases in wildlife are increasingly associated with animal mortality and species declines, but their source and genetic characterization often remains elusive. Amphibian chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd), has been associated with catastrophic and well-documented amphibian population declines and extinctions at the global scale. We used histology and whole-genome sequencing to describe the lesions caused by, and the genetic variability of, two Bd isolates obtained from a mass mortality event in a captive population of the threatened Chilean giant frog (Calyptocephalella gayi). This was the first time an association between Bd and high mortality had been detected in this charismatic and declining frog species. Pathological examinations revealed that 30 dead metamorphosed frogs presented agnathia or brachygnathia, a condition that is reported for the first time in association with chytridiomycosis. Phylogenomic analyses revealed that Bd isolates (PA1 and PA2) from captive C. gayi group with other Bd isolates (AVS2, AVS4, and AVS7) forming a single highly supported Chilean Bd clade within the global panzootic lineage of Bd (BdGPL). These findings are important to inform the strengthening of biosecurity measures to prevent the impacts of chytridiomycosis in captive breeding programs elsewhere.
| S-EPMC8497818 | biostudies-literature
Project description:Micro-computed tomography (microCT) of small animals has led to a more detailed and more accurate three-dimensional (3D) view on different anatomical structures in the last years. Here, we present the cranial anatomy of two frog species providing descriptions of bone structures and soft tissues of the feeding apparatus with comments to possible relations to habitat and feeding ecology. Calyptocephalella gayi, known for its aquatic lifestyle, is not restricted to aquatic feeding but also feeds terrestrially using lingual prehension. This called for a detailed investigation of the morphology of its feeding apparatus and a comparison to a fully terrestrial species that is known to feed by lingual prehension such as Leptodactylus pentadactylus. These two frog species are of similar size, feed on similar diet but within different main habitats. MicroCT scans of both species were conducted in order to reconstruct the complete anatomical condition of the whole feeding apparatus for the first time. Differences in this regard are evident in the tongue musculature, which in L. pentadactylus is more massively built and with a broader interdigitating area of the two main muscles, the protractor musculus genioglossus and the retractor musculus hyoglossus. In contrast, the hyoid retractor (m. sternohyoideus) is more massive in the aquatic species C. gayi. Moreover, due to the different skull morphology, the origins of two of the five musculi adductores vary between the species. This study brings new insights into the relation of the anatomy of the feeding apparatus to the preferred feeding method via 3D imaging techniques. Contrary to the terrestrially feeding L. pentadactylus, the skeletal and muscular adaptations of the aquatic species C. gayi provide a clear picture of necessities prescribed by the habitat. Nevertheless, by keeping a certain amount of flexibility of the design of its feeding apparatus, C. gayi is able to employ various methods of feeding.
| S-EPMC8273601 | biostudies-literature
Project description:Sertularella gayi ((a hydroid)), genomic and transcriptomic data
| PRJEB80922 | ENA
Project description:This study aims to investigate the DNA methylation patterns at transcription factor binding regions and their evolutionary conservation with respect to binding activity divergence. We combined newly generated bisulfite-sequencing experiments in livers of five mammals (human, macaque, mouse, rat and dog) and matched publicly available ChIP-sequencing data for five transcription factors (CEBPA, HNF4a, CTCF, ONECUT1 and FOXA1). To study the chromatin contexts of TF binding subjected to distinct evolutionary pressures, we integrated publicly available active promoter, active enhancer and primed enhancer calls determined by profiling genome wide patterns of H3K27ac, H3K4me3 and H3K4me1.
2022-10-20 | E-MTAB-11946 | biostudies-arrayexpress
Project description:Whole genome sequencing of the Arabidopsis thaliana dot5-1 transposon insertion line described in Petricka et al 2008 The Plant Journal 56(2): 251-263.
2022-08-07 | E-MTAB-12010 | biostudies-arrayexpress