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ABSTRACT: Fertilized soil sequencing

PROVIDER: PRJNA942427 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR23754110_1.fastq.gz	Fastqsanger.gz
	SRR23754110_2.fastq.gz	Fastqsanger.gz
	SRR23754111_1.fastq.gz	Fastqsanger.gz
	SRR23754111_2.fastq.gz	Fastqsanger.gz
	SRR23754112_1.fastq.gz	Fastqsanger.gz

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Project description:Fertilized soil sequencing

| PRJNA942431 | ENA

Comparative gene expression analysis between Nipponbare and 6-4 under two conditions

2009-10-31 | GSE6187 | GEO

Implications of the use of organic fertilizers for Antibiotic Resistant Gene dissemination in agricultural soils and fresh food products. A plot-scale study

Project description:The spread of antibiotic resistance genes (ARG) into agricultural soils, products, and foods severely limits the use of organic fertilizers in agriculture. In this study, experimental land plots were fertilized, sown, and harvested for two consecutive agricultural cycles using either mineral or three types of organic fertilizers: sewage sludge, pig slurry, or composted organic fraction of municipal solid waste. The analysis of the relative abundances of more than 200,000 ASV (Amplicon Sequence Variants) allowed the identification of a small, but significant (<10%) overlap between soil and fertilizer microbiomes, particularly in soils sampled the same day of the harvest (post-harvest soils). Loads of clinically relevant ARG were significantly higher (up to 100 fold) in fertilized soils relative to the initial soil. The highest increases corresponded to post-harvest soils treated with organic fertilizers, and they correlated with the extend of the contribution of fertilizers to the soil microbiome. Edible products (lettuce and radish) showed low, but measurable loads of ARG (sul1 for lettuces and radish, tetM for lettuces). These loads were minimal in mineral fertilized soils, and strongly dependent on the type of fertilizer. We concluded that at least part of the observed increase on ARG loads in soils and foodstuffs were actual contributions from the fertilizer microbiomes. Thus, we propose that adequate waste management and good pharmacological and veterinarian practices may significantly reduce the potential health risk posed by the presence of ARG in agricultural soils and plant products.

2021-07-09 | GSE179685 | GEO

Project description:Organic fertilized soil samples

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Project description:Fertilized soil fungal community

| PRJNA803012 | ENA

To a better understanding of the impact of vine nitrogen status on volatile thiols from plot to transcriptome level

Project description:Purpose: The identification of genes in Sauvignon blanc berries which respond to nitrogen fertilization at (v+28) and at (v+35) and the identification of genes potentially involved in 3SH precursors biosynthesis. Methods: Grape berries mRNA profiles of control vine (C) and vine fertilized with 100 U/ha of nitrogen (Soil N100) at (v+28) and at (v+35) in 2013 and 2014 were generated by deep sequencing, in triplicate. Results: Genes in Sauvignon blanc berries at 2 stages ((v+28) and (v+35)) which respond to nitrogen supply were identified and genes potentially involved in 3SH precursors synthesis were described.

2017-02-09 | GSE77895 | GEO

Project description:Metagenomic sequencing data of fertilized soil and radish

| PRJNA1240223 | ENA

Project description:metagenomic data of fertilized soil microbiome

| PRJNA1107635 | ENA

Project description:soil bacterial community in fertilized forest

| PRJNA822009 | ENA

Transcription profiling of rice varieties Nipponbare and 6-4 grown in either phosphorus deficient or fertilized soil

Project description:Nipponbare performs poorly in phosphorus (P) deficient soil whereas a Nipponbare-derived NIL containing the Pup1 allele of donor parent Kasalath is tolerant to P deficiency. In this experiment we compared gene expression patterns in roots of this NIL to Nipponbare, grown either in a P deficient or P fertilized soil. The aim is to separate constitutive differences in expression from those induced by P deficiency. Experiment Overall Design: Total RNA was extrancted from root that were grown under two conditions and prepared three biological replicant in each line (total 6 samples in each line). Experiment Overall Design: We used 6 slides for this experiment, in each slide, Nipponbare and 6-4 samples grown under same condition were hybridized.

2009-11-10 | E-GEOD-6187 | biostudies-arrayexpress

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