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Comparative gene expression analysis between Nipponbare and 6-4 under two conditions

ABSTRACT: Nipponbare performs poorly in phosphorus (P) deficient soil whereas a Nipponbare-derived NIL containing the Pup1 allele of donor parent Kasalath is tolerant to P deficiency. In this experiment we compared gene expression patterns in roots of this NIL to Nipponbare, grown either in a P deficient or P fertilized soil. The aim is to separate constitutive differences in expression from those induced by P deficiency. Keywords: genotype comparison, constitutive differential expression

ORGANISM(S): Oryza sativa Oryza sativa Japonica Group

PROVIDER: GSE6187 | GEO | 2009/10/31

SECONDARY ACCESSION(S): PRJNA100661

REPOSITORIES: GEO

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Transcription profiling of rice varieties Nipponbare and 6-4 grown in either phosphorus deficient or fertilized soil

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Project description:Tissue-specific transcriptional profiling of the abscission layer (AL) at the base of young flower in rice using laser micro-dissection: NIL(qSH1) vs. Nipponbare.

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