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ABSTRACT: Culture in vanadium-titanium magnetite tailings leach solution and different conditions

PROVIDER: PRJNA943355 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR23854911.fastq.gz	Fastqsanger.gz
	SRR23854912.fastq.gz	Fastqsanger.gz
	SRR23854913.fastq.gz	Fastqsanger.gz
	SRR23854833.fastq.gz	Fastqsanger.gz
	SRR23854834.fastq.gz	Fastqsanger.gz

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Project description:Culture in vanadium-titanium magnetite tailings leach solution and BAA condition

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Gene expression profile of 3D liver organoids composed of hepatocyte and Kupffer cells exposed to nanoparticles.

Project description:Single cell RNA sequencing of 3D liver spheroid exposed to vanadium pentoxide (V2O5), titanium dioxide (TiO2), or graphene oxide (GO) was used to elucidate the toxicological mechanisms of different nanoparticles.

2023-04-08 | GSE201500 | GEO

Project description:microbial driven mineral weathering in magnetite tailings

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Determination of Transcription Start Sites (TSS) in Azotobacter vinelandii grown with iron, vanadium or molybdenum for 6 hours after nitrogen step-down

Project description:This experiment was to determine genome wide qualitative and quantitative differences in transcription starts under conditions of availability of iron or vanadium or molybdenum which act as co-factors for different nitrogenase isoenzymes. In response to availability of the co-factors transcription initiation is mediated by three paralogs of vanadium nitrogenase activator VnfA1, VnfA2 and, VnfA3. ChIP-Seq data for VnfA1 and VnfA3 will be submitted separately.

2022-06-23 | E-MTAB-11706 | biostudies-arrayexpress

Project description:Towards bioleaching of a vanadium containing magnetite for metal recovery

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Identification of differentially expressed genes in human alveolar bone cells cultured on different titanium surfaces.

Project description:To evaluate mRNA expression profile (transcriptome), we identified mRNAs of osteoblastic cells from human alveolar crest culture in contact with different titanium surfaces: control (polished), nanotextured (polished titanium discs, etching at 25oC with 50% H2SO4conc and 50% H2O2aq) , nano+submicrotextured (polished titanium discs, etching at 50oC with 50% H2SO4conc and 50% H2O2aq) and rough microtexture (polished titanium discs, etching at 50oC with 100% H2O2aq). The osteoblastic cells were cultured in the alpha-minimum essential medium, supplemented with fetal bovine serum, gentamicin, fungizone, dexamethasone, ascorbic acid and β-glycerophosphate. The mRNA expression profiling was analyzed through hybridizations with whole-human genome Agilent microarray (4x44K format).

2014-11-14 | E-MTAB-3091 | biostudies-arrayexpress

Identification of differentially expressed microRNA in human alveolar bone cells cultured on different titanium surfaces.

Project description:To evaluate miRNA expression profile (miRNOME), we identified microRNAs of osteoblastic cells from human alveolar crest culture in contact with different titanium surfaces: control (polished), nanotextured (polished titanium discs, etching at 25°C with 50% H2SO4conc and 50% H2O2aq) , nano+submicrotextured (polished titanium discs, etching at 50°C with 50% H2SO4conc and 50% H2O2aq) and rough microtexture (polished titanium discs, etching at 50°C with 100% H2O2aq). The osteoblastic cells were cultured in the alpha-minimum essential medium, supplemented with fetal bovine serum, gentamicin, fungizone, dexamethasone, ascorbic acid and β-glycerophosphate. The microRNA expression profiling was analyzed through hybridizations with Agilent miRNA-microarray (8x15K format).

2014-12-12 | E-MTAB-3093 | biostudies-arrayexpress

Project description:under different water temperature culture conditions.

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Early vanadium stress induced transcriptional changes in the root of Oryza sativa

Project description:Whole genome arrays have been used to analyze the transcriptomic response to vanadium stress in rice root. Identify genes and pathways that would respond to vanadium stress

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ChIP-Seq to determine the binding of enhancer binding proteins VnfA1 and VnfA3 grown in presence of vanadium or in iron-only conditions in Azotobacter vinelandii DJ.

Project description:The enhancer binding protein VnfA1 of Azotobacter vinelandii has two paralogs as well VnfA2 and VnfA3. This experiment was carried out to compare the binding sites of VnfA1 and VnfA3 under conditions of vanadium availability and its absence. This is important for the regulation of expression of alternative nitrogenase isoenzymes in response to metal availability.

2022-06-23 | E-MTAB-11716 | biostudies-arrayexpress

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