Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Capture-C in somite-matched pre-somitic mesoderm from Smchd1GFP/GFP, Smchd1MD43-GFP/MD43-GFP, Smchd1+/+ and Smchd1MD43/MD43 embryos.

ABSTRACT: Capture-C in somite-matched pre-somitic mesoderm from Smchd1GFP/GFP, Smchd1MD43-GFP/MD43-GFP, Smchd1+/+ and Smchd1MD43/MD43 embryos.

PROVIDER: PRJNA950986 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24037064_1.fastq.gz	Fastqsanger.gz
	SRR24037064_2.fastq.gz	Fastqsanger.gz
	SRR24037065_1.fastq.gz	Fastqsanger.gz
	SRR24037065_2.fastq.gz	Fastqsanger.gz
	SRR24037066_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 26

Similar Datasets

Capture-C in somite-matched pre-somitic mesoderm from Smchd1GFP/GFP, Smchd1MD43-GFP/MD43-GFP, Smchd1+/+ and Smchd1MD43/MD43 embryos.

Project description:Capture-C from in situ HiC libraries in tailbud tissue containing pre-somitic mesoderm (PSM) dissected from Smchd1GFP/GFP, Smchd1MD43-GFP/MD43-GFP, Smchd1+/+ and Smchd1MD43/MD43 embryos E8.5 embryos at the 7-9 somite stage of development. Somite stage is a good indicator of the precise stage of embryonic development.

2023-04-04 | GSE228673 | GEO

RNAseq from 8 somite stage PSM

Project description:RNAseq from somite-paired pre-somitic mesoderm from E8.5 embryo tailbuds at the 8-somite developmental stage

2021-05-08 | GSE174069 | GEO

GFP ChIP-seq in Smchd1-GFP NSCs

Project description:ChIP-seq using an anti-GFP antibody to check chromatin binding of Smchd1 in Smchd1-GFPMD43/MD43 and Smchd1-GFP+/+ neural stem cells.

2021-05-08 | GSE174066 | GEO

GFP ChIP-seq in Smchd1-GFP NSCs

Project description:GFP ChIP-seq in Smchd1-GFP NSCs

| PRJNA728088 | ENA

in situ HiC in Smchd1-GFP NSCs

Project description:in situ HiC to assess chromatin conformation in Smchd1-GFPMD43/MD43 and Smchd1-GFP+/+ neural stem cells.

2021-05-08 | GSE174086 | GEO

H3K27me3 ChIP-seq in Smchd1-GFP NSCs

Project description:ChIP-seq using an anti-H3K27me3 antibody to asses histone 3 lysine 27 tri-methylation modification in Smchd1-GFPMD43/MD43 and Smchd1-GFP+/+ neural stem cells.

2021-05-08 | GSE174067 | GEO

in situ HiC in Smchd1-GFP NSCs

Project description:in situ HiC in Smchd1-GFP NSCs

| PRJNA728119 | ENA

H3K27me3 ChIP-seq in Smchd1-GFP NSCs

Project description:H3K27me3 ChIP-seq in Smchd1-GFP NSCs

| PRJNA728087 | ENA

Time course assay in Mouse Pre-Somitic Mesoderm

Project description:Stem cell-derived tissues have wide potential for modelling developmental and pathological processes as well as cell-based therapy. However, it has proven difficult to generate several key cell types in vitro, including skeletal muscle. In vertebrates, skeletal muscles derive during embryogenesis from the presomitic mesoderm (PSM). Treatment of mouse ES cells with a combination of the secreted Wnt activator R-Spondin3 and the BMP inhibitor Noggin generated cells expressing the early PSM marker Mesogenin1 (Msgn1) with high efficiency. To confirm their identity, we mapped gene expression profiles at successive stages of PSM differentiation in vivo and showed that the differentiated ES cells closely corresponded to the posterior PSM domain that expresses Msgn1 and then with time in culture matured to acquire the profile of the anterior Pax3 domain. When grafted into injured adult muscle in vivo these Pax3-expressing-cells generated large numbers of muscle fibers. Our system therefore efficiently produces myogenic precursors in vitro by recapitulating stepwise early myogenic differentiation in vivo. These findings should advance the development of cellular therapies for muscle degenerative diseases. Pre Somitic Mesoderm (PSM) were dissected into 7 pieces in Stage E8.5 Mouse embryo. The experiment was designed to have biological triplicate in each pieces. The PSM is a symmetric structure, left and right area were obtained from one embryo, another set of dissection was obtained from another embryo.

2015-01-01 | E-GEOD-39613 | biostudies-arrayexpress

RNA-seq in Smchd1 wild-type and Smchd1 null presomitic mesoderm from E9.5 embryos

Project description:RNA-seq in Smchd1 wild-type and Smchd1 null presomitic mesoderm from E9.5 embryos

| PRJNA439000 | ENA