Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bamboo charcoal affects soil properties and bacterial community in tea plantations

PROVIDER: PRJNA970211 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24463617_1.fastq.gz	Fastqsanger.gz
	SRR24463617_2.fastq.gz	Fastqsanger.gz
	SRR24463618_1.fastq.gz	Fastqsanger.gz
	SRR24463618_2.fastq.gz	Fastqsanger.gz
	SRR24463619_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Project description:Soil bacterial community in the tea plantations

| PRJNA545380 | ENA

Project description:Soil microbiome in moso bamboo plantations

| PRJNA563227 | ENA

Project description:ancient tea plantations soil bacteria

| PRJNA640840 | ENA

Project description:ancient tea plantations soil fungi

| PRJNA640842 | ENA

Project description:Soil physicochemical properties and bacterial community analysis in Schima superba plantations of different ages

| PRJNA954336 | ENA

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: implications for disease suppression

Project description:Cropping soils vary in extent of natural suppression of soil-borne plant diseases. However, it is unknown whether similar variation occurs across pastoral agricultural systems. We examined soil microbial community properties known to be associated with disease suppression across 50 pastoral fields varying in management intensity. The composition and abundance of the disease-suppressive community were assessed from both taxonomic and functional perspectives.

2018-03-30 | GSE112489 | GEO

soil metagenome

Project description:Bacterial community in tea plantation soil

| PRJNA670895 | ENA

Differences in major bacterial taxa in three high Arctic soils lead to different CO2 production rates

Project description:The melting of permafrost and its potential impact on greenhouse gas emissions is a major concern in the context of global warming. The fate of the carbon trapped in permafrost will largely depend on soil physico-chemical characteristics, among which are the quality and quantity of organic matter, pH and water content, and on microbial community composition. In this study, we used microarrays and real-time PCR (qPCR) targeting 16S rRNA genes to characterize the bacterial communities in three different soil types representative of various Arctic settings. The microbiological data were linked to soil physico-chemical characteristics and CO2 production rates. Microarray results indicated that soil characteristics, and especially the soil pH, were important parameters in structuring the bacterial communities at the genera/species levels. Shifts in community structure were also visible at the phyla/class levels, with the soil CO2 production rate being positively correlated to the relative abundance of the Alphaproteobacteria, Bacteroidetes, and Betaproteobacteria. These results indicate that CO2 production in Arctic soils does not only depend on the environmental conditions, but also on the presence of specific groups of bacteria that have the capacity to actively degrade soil carbon.

2011-01-01 | GSE24800 | GEO

soil metagenome

Project description:Bamboo soil bacterial community with different elevation Metagenome

| PRJNA254931 | ENA

C. elegans genomic response to Konza Prairie Soil bacterial environment

Project description:Here we have compared adult wildtype (N2) C. elegans gene expression when grown on different bacterial environments/fod sources in an effort to model naturally occuring nematode-bacteria interactions at the Konza Prairie. We hypothesize that human-induced changes to natural environments, such as the addition of nitrogen fertalizer, have effects on the bacterial community in soils and this drives downstream changes in the structure on soil bacterial-feeding nematode community structure. Here we have used transcriptional profiling to identify candidate genes involved in the interaction of nematodes and bacteria in nature.

2009-05-02 | GSE15923 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data