Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Hanjiang black Pig Genome Assemblely Project

PROVIDER: PRJNA975220 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24694847_subreads.fastq.gz	Fastqsanger.gz
	SRR24694848_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Project description:Juema Pig Genome Assemblely Project

| PRJNA980289 | ENA

Project description:Large_white Pig Genome Assemblely Project

| PRJNA972868 | ENA

Project description:Juema Pig Genome Assemblely Project

| PRJNA975126 | ENA

Project description:Bamei Pig Genome Assemblely Project

| PRJNA858995 | ENA

Project description:The original sequence read of the Hanjiang black pig

| PRJNA1035607 | ENA

Candidate gene screening for lipid deposition combining transcriptomic and proteomic data in Nanyang Black pig

Project description:Lower selection intensity resulted in obvious genetically and phenotypically divergences in China indigenous breeds. Nanyang black pig, a China indigenous breed, was famous for its high lipid deposition and high genetic divergence, which made it an ideal model investigating mechanism of lipid position traits in pig. Here, transcriptome and TMT-based proteome analyses were carried out in longissimus dorsi (LD) tissue of high genetic variation individual Nanyang black pigs. After phenotyping in a big population with multi-production traits indexes, six Nanyang black pigs were selected and divided into relatively high and low lipid deposition groups. Combining analyses of transcriptomic and proteomic data identified 15 candidate genes determining lipid deposition genetic divergence in Nanyang black pig. Among them, FASN, CAT, and SLC25A20 were main causal candidate genes. The other genes could be divided as lipid deposition related gene (BDH2, FASN, CAT, DHCR24, ACACA, GK, SQLE, ACSL4, SCD), PPARA-centered fat metabolism regulatory factors (PPARA, UCP3), transcription or translation regulators (SLC25A20, PDK4, CEBPA), and integrin, structural proteins, signal transduction-related genes (EGFR). The multi-omics data set provided a valuable resource for analyses on lipid deposition-traits in pig, especially in Nanyang black pig.

2021-01-28 | GSE165613 | GEO

Dynamic profiles of microRNAome in porcine liver

Project description:To evaluate the roles of miRNA in porcine liver, dynamic profiles of microRNAome were investigated in swine breeds with different traits of commercial interest, we sampled liver tissues from a Chinese well-known elite native breed of Enshi black pig, a Large White pig, and a Chinese wild boar living within the same environment at the same day-old(90d).

2017-12-05 | GSE90901 | GEO

Global patterns of the methylome in porcine liver

Project description:To explore the methylome differences of swine breeds with different traits of commercial interest, we sampled liver tissues from a Chinese well-known elite native breed of Enshi black pig, a Large White pig, and a Chinese wild boar living within the same environment at the same daya-old (90d).

2017-12-14 | GSE92417 | GEO

Dynamic Profiles of transcriptome in porcine liver

Project description:To evaluate the roles of gene regulation in porcine liver, dynamic profiles of transcriptome were investigated in swine breeds with different traits of commercial interest, we sampled liver tissues from a Chinese well-known elite native breed of Enshi black pig, a Large White pig, and a Chinese wild boar living within the same environment at the same day-old(90d).

2017-12-15 | GSE92433 | GEO

Project description:Yunong black pig WGS

| PRJNA990341 | ENA