1000-genome - OmicsDI

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Heyndrickxia coagulans DSM 1 = ATCC 7050 (2)
Halodesulfovibrio aestuarii DSM 17919 = ATCC 29578 (2)
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Escherichia coli str. K-12 substr. MG1655 (2)

Repository

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pride (45)
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Instrument Platform

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Model-G2505B US23502366 (1)
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Publication Date

2013 (291)
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2004 (2)

UNIPROT ID/AC

P20963 (2)
P35225 (2)
P78552 (2)
P29597 (2)
P29350 (2)
P24394 (2)
P42229 (2)
P51692 (2)
O60674 (2)
Q14627 (1)
P26725 (1)
P33300 (1)
P54070 (1)
P12685 (1)
P42951 (1)
P40361 (1)
Q08650 (1)
Q12271 (1)
P27810 (1)
P17324 (1)
Q12043 (1)
P40471 (1)
Q08227 (1)
P20133 (1)
P06197 (1)
Q08108 (1)
P40511 (1)
Q12007 (1)
P53629 (1)
P40556 (1)

CHEBI ID

CHEBI:17029 (57)
CHEBI:49183 (57)
CHEBI:18246 (56)
HSO3 (56)
CPD-7033 (56)
FE+2 (56)
CHEBI:17810 (56)
CHEBI52386 (56)
CHEBI52389 (56)
CHEBI52615 (56)
CHEBI52388 (56)
CPD-7000 (56)
CHEBI:58608 (56)
CHEBI:28573 (56)
CHEBI:74474 (56)
CHEBI:17909 (56)
CHEBI:52329 (56)
CHEBI:52327 (56)
CHEBI:52325 (56)
CHEBI:52328 (56)
CHEBI:16475 (56)
CHEBI:48943 (56)
CHEBI:13086 (56)
CHEBI:46970 (56)
CHEBI:12886 (56)
CHEBI:17284 (56)
CHEBI:16863 (56)
CHEBI:52320 (56)
CHEBI:17411 (56)
CHEBI:62098 (55)

Metabolite Name

PC(18:4_22:6) (1)
PC(17:0_22:6) (1)
PC(17:0_20:4) (1)
PE(20:3_20:5) (1)
PC(15:0_18:2) (1)
LPS(21:0) (1)
LPC(21:0) (1)
LPS(20:5) (1)
PIP(O-38:5) (1)
PI(35:1) (1)
MIPC(m35:0) (1)
HexCer(d33:2) (1)
LacCer(t32:2) (1)
PI(P-34:2) (1)
PI(O-34:3) (1)
LPS(34:0) (1)
WE(51:0) (1)
Cer(d49:0) (1)
PS(33:1) (1)
Guanosine-monohosphate (1)
Adenosine 5'-Triphosphate (1)
2,2',2''-((2R,5R,8S,11R)-11-((2R,4S,5E,7E,9E)-2,4-dihydroxypentadeca-5,7,9-trien-1-yl)-3,6,9,13,17-pentaoxo-1,4,7,10,14-pentaazacycloheptadecane-2,5,8-triyl)triacetamide (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5,7-dihydroxyoctadeca-8,10,12-trienoic acid (1)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparaginyl-D-asparagine (1)
(3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoyl)-D-asparagine (1)
3-((3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienamido)propanoic acid (1)
(3R,5R,7S,8E,10E,12E)-3-amino-5-hydroxy-7-methoxyoctadeca-8,10,12-trienoic acid (1)
DG(36:5) (1)
PS(O-34:0) (1)
PE(44:11) (1)

First Public Date

2013 (702)
2014 (374)
2017 (120)
2020 (83)
2019 (81)
2018 (80)
2024 (65)
2025 (63)
2021 (55)
2016 (46)
2022 (41)
2026 (34)
2015 (33)
2023 (28)
2012 (2)
2011 (2)
2010 (2)

Modelling Approach

Constraint-based model (56)
Ordinary differential equation model (2)

Lab affiliation

Li2D (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, the Netherlands 2 Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, the Netherlands (1)
Anhui Medical University (1)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, 4072 St. Lucia, Australia. (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
City University of New York Advanced Science Research Center - Nanoscience Department, USA City University of New York Hunter College -Chemistry & Biochemistry Department, USA (1)
Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain (1)
Department of Biochemistry Geisel School of Medicine at Dartmouth (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. 2 Bioinformatic Solutions Inc., Waterloo, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Biotechnology, Applied Sciences, Delft University of Technology, The Netherlands (1)
Discovery Proteomics Facility University of Oxford Target Discovery Institute, NDMRB Oxford, OX3 7FZ (1)
Drug Discovery Lab, Department of Neurology, University of California, Los Angeles, CA 90095, USA (1)
Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France (1)
Institute of Modern Biopharmaceuticals, State Key Laboratory Breeding Base of Eco-Environment and Bio-Resource of the Three Gorges Area, key laboratory of Eco-environment of Three Gorges Reservoir, Ministry of Education, School of Life Sciences, Southwest University. Chongqing 400715, China (1)
Instituto de Ciencia y Tecnologia Animal Iniversitat Politecnica de Valencia (UPV) Valencia, Spain (1)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València Valencia, Spain (1)
Jian Zhang Ph.D and Professor China National Rice Research Institute 28 shuidaosuo road Fuyang, Hangzhou P.R.China 311400 Office: +86 571 63370277 Cell: +86 13656661382 Email: zhangjian@caas.cn (mailto:zhangjian@caas.cn) (1)
Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University. (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO) Département des Sciences Analytiques (DSA) Institut pluridisciplinaire Hubert Curien (IPHC) - UMR7178 Centre national de la recherche scientifique (CNRS) Université de Strasbourg (Unistra) France (1)
Laboratory of nucleic acids biochemistry, Institute of chemical biology and fundamental medicine SB RAS, Russia (1)
Mass Spectrometry and Proteomics Core Facility, National Microbiology Laboratory, Public Health Agency of Canada 1015 Arlington Street, Winnipeg, Manitoba, Canada R3E 3R2 (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (1)
Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, The Netherlands (1)
National Microbiology Laboratory, Public Health Agency of Canada Mass Spectrometry and Proteomics Core Facility (1)
National Microbiology Laboratory, Public Health Agency of Canada Proteomics and Mass Spectrometry Core Facility (1)
National Microbiology Laboratory, Public Health Agency of Canada Proteomics and Mass Spectroscopy Core Facility (1)
PI and Professor (1)
Professor at the Section for Clinical Chemistry, Department of Translational Medicine, Lund University. Sweden (1)

IsPrivate

False (59)

Model Flag

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Classification

bacteria (133)
viruses (9)
fungi (6)
protozoa (3)
helminths (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (1138)
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ChIP-seq (107)
Methylation profiling by array (68)
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2005 (11)
2003 (4)
2004 (3)
2001 (3)
2000 (2)
2002 (1)
1999 (1)

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PacBio RNAseq(IsoSeq) for 1000 Genome Trio Samples

PRJEB13749 | ENA

1000 Genomes Project phase 3: 30X coverage whole genome sequencing

30X whole genome sequencing coverage of the 2504 Phase 3 1000 Genome samples.

PRJEB31736 | ENA

1000 Genome Pilot Projects

Three pilot studies for the 1000 Genomes project.

PRJNA61209 | ENA

HLA typing from 1000 genomes whole genome and whole exome illumina data.

Not available

S-EPMC3819389 | biostudies-literature

A reference catalog of DNA palindromes in the human genome and their variations in 1000 Genomes.

Not available

S-EPMC7680136 | biostudies-literature

Burkholderia cenocepacia strain:P2-1000

Burkholderia cenocepacia P2-1000 genome sequencing

PRJNA337328 | ENA

1000 Genomes Project phase 3: 30X coverage whole genome sequencing of 698 samples to complete trios

30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

PRJEB36890 | ENA

Mitogenomes from The 1000 Genome Project reveal new Near Eastern features in present-day Tuscans.

Not available

S-EPMC4365045 | biostudies-literature

High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios.

Not available

S-EPMC9439720 | biostudies-literature

8-chip high-resolution aCGH experiment NA15510 vs. NA18505

We introduce high-throughput and massive paired-end mapping (PEM), a large-scale genome sequencing method to identify SVs 3 kb or larger that combines the rescue and capture of paired-ends of 3 kb fragments, massive 454 Sequencing, and a computational approach to map DNA reads onto a reference genom...

ORGANISM(S): Homo sapiens

2007-09-28 | E-GEOD-9002 | biostudies-arrayexpress

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