18s - OmicsDI

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Unknown (4265)
Genomics (3090)
Transcriptomics (1437)
Proteomics (63)
Other (48)
Metabolomics (13)
Methylation profiling (3)

Organisms

Homo sapiens (740)
Mus musculus (334)
Rattus norvegicus (85)
Arabidopsis thaliana (37)
Saccharomyces cerevisiae (24)
Danio rerio (18)
Drosophila melanogaster (16)
Sus scrofa (14)
Daphnia magna (13)
Bos taurus (13)
Colinus virginianus (9)
Caenorhabditis elegans (9)
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Ovis aries (8)
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Gallus gallus (6)
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Candida albicans (5)
Dictyostelium discoideum (4)
Equus caballus (4)
Aspergillus fumigatus (4)
Escherichia coli str. K-12 substr. MG1655 (4)
mixed sample (4)
Aplysia californica (3)
Panax ginseng (3)
Macaca mulatta (3)
Coprinopsis cinerea (3)
Glycine max (3)
Talaromyces marneffei (2)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (2)

Organisms

Homo sapiens (108)
marine metagenome (87)
soil metagenome (71)
seawater metagenome (54)
Mus musculus (45)
freshwater metagenome (26)
sediment metagenome (24)
marine sediment metagenome (22)
aquatic metagenome (18)
Saccharomyces cerevisiae (17)
biofilm metagenome (14)
gut metagenome (14)
lake water metagenome (14)
microeukaryotic plankton metagenome (11)
rhizosphere metagenome (11)
riverine metagenome (10)
algae metagenome (9)
marine plankton metagenome (9)
activated sludge metagenome (9)
eukaryotic plankton metagenome (8)
marine eukaryotic metagenome (7)
coral reef metagenome (7)
Eukaryota (7)
Rattus norvegicus (7)
uncultured marine microorganism (6)
uncultured marine eukaryote (6)
glacier metagenome (6)
pond metagenome (6)
Arabidopsis thaliana (6)
microbial mat metagenome (6)

Repository

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geo (148)
pride (56)
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Tissue

Cell culture (14)
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Disease

Normal (19)
Melanoma (4)
Breast cancer (3)
Neuroblastoma (3)
Apparently healthy (2)
Head and neck squamous cell carcinoma (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Toxicity (1)
HIV encephalitis (1)
SMARD1 (1)
Dermal neurofibroma (1)
Locally advanced breast carcinoma (LABC; non-inflammatory) (1)
Epithelioid mesothelioma (1)
Large cell carcinoma (1)
Wilms' tumor (1)
Invasive pituitary adenoma (1)
Multibacillary (1)
CUP (1)
Ependymoma (1)
Rett syndrome (1)
Colon mucinous adenocarcinoma (NCI Metathesaurus CL029553) in DiseaseLocation rectosigmoid colon has DiseaseStaging T3N2M1 (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Hutchinson Gilford Progeria Syndrome (1)
Non-metastatic melanoma (1)
Alveolar rhabdomyosarcoma (1)
Internal Carotid Artery Stenosis (NCI Metathesaurus C0340569) has DiseaseStaging Asymptomatic (1)
Pancreatic ductal adenocarcinoma (1)
Limited cutaneous subset (1)
"hepatocellular adenoma" (1)
Chronic granulomatous disease (1)

Technology Type

Mass Spectrometry (57)
Shotgun proteomics (37)
Affinity purification coupled with mass spectrometry proteomics (15)
Mass spectrometry assay (6)
Mass spectrometry (6)
Bottom-up proteomics (3)
Data-dependent acquisition (2)
SRM/MRM (2)
Top-down proteomics (2)
ESI (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
RNA mass spectrometry (1)

Instrument Platform

Illumina NovaSeq 6000 (38)
NextSeq 500 (28)
Illumina HiSeq 2500 (19)
Illumina HiSeq 4000 (19)
Illumina HiSeq 2000 (18)
DNBSEQ-T7 (11)
Illumina HiSeq 1500 (9)
BGISEQ-500 (7)
TruSeq RNA Sample Preparation protocol (3)
Axon- GenePix4000B (3)
Scanning hardware (3)
Illumina NovaSeq X (3)
NA (3)
NanoDrop (2)
ScanArray Express HT [PerkinElmer] (2)
Illumina Genome Analyzer II (2)
Illumina MiSeq (2)
University College Dublin Animal Research Ethics Committee approval, a licence from the Department of Health (B100/3525) and explicit owner/trainer informed consent were obtained for the use of all horses and procedures in this study. (1)
Thermal cycler, Agilent BioAnalyzer 2100 (1)
Microcentrifuge, vortex spinner, pipettes, -80C freezer (1)
Zeiss Stereomicroscope, standard lab plasticware (1)
DESeq2 (1)
Microarray scanner system (1)
GeneChip® Scanner 3000 7G (Affymetrix) (1)
Agilent 2001 Bioanalyzer (1)
GenePix 4000B [Axon] (1)
Agilent® 2100 Bioanalyzer Instrument (1)
None (1)
QuantStudioTM 12K Flex system (1)
Illumina HiScan (1)

Publication Date

2010 (169)
2013 (145)
2012 (142)
2014 (138)
2015 (122)
2011 (117)
2016 (98)
2008 (89)
2009 (88)
2020 (54)
2021 (52)
2007 (48)
2025 (47)
2026 (43)
2022 (40)
2024 (36)
2023 (36)
2018 (32)
2019 (30)
2006 (23)
2017 (22)
2005 (21)
2004 (15)

CHEBI ID

CHEBI:15721 (2)
CHEBI:48928 (2)
CHEBI:15428 (2)
CHEBI:17203 (2)
CHEBI:18050 (2)
CHEBI:16857 (2)
CHEBI:16015 (2)
CHEBI:17295 (2)
CHEBI:140983 (1)
CHEBI:71756 (1)
CHEBI:71744 (1)
CHEBI:62976 (1)
CHEBI:49533 (1)
CHEBI:134502 (1)
CHEBI:134459 (1)
CHEBI:71742 (1)
CHEBI:71728 (1)
CHEBI:134435 (1)
CHEBI:136210 (1)
CHEBI:71720 (1)
CHEBI:66978 (1)
CHEBI:66866 (1)
CHEBI:17842 (1)
CHEBI:134243 (1)
CHEBI:66865 (1)
CHEBI:66860 (1)
CHEBI:66861 (1)
CHEBI:66858 (1)
CHEBI:140990 (1)
CHEBI:138355 (1)

Metabolite Name

Serine (6)
Phe-Val (6)
Aminocyclopyrachlor (5)
Leucine (5)
Norleucine (5)
Glycine (5)
4-Hydroxyproline (5)
2-Aminobutyric acid (5)
13-Ethenyl-5,7,9,11,13-pentamethyl-2-oxa-18-azahexacyclo[20.2.2.13,10.04,9.016,20.014,27]heptacosa-1(24),11,22,25-tetraene-15,17,19-trione (5)
(2S)-3-methyl-2-[[(2R)-5-oxopyrrolidine-2-carbonyl]amino]butanoic acid (5)
Arginine (5)
Oxypurinol (5)
Homoserine (5)
9-Oxo-10(E),12(E)-octadecadienoic acid (5)
Adenosine (5)
Alanine (5)
Glutamine (5)
Xanthine (5)
Tryptophan (5)
Inosine (5)
13,14-Dihydro-16,16-difluoroprostaglandin J2 (4)
Phosphinic acid, imino(di-o-phenylene)- (4)
L-Valyl-L-proline (4)
Histidine (4)
Glutamate (4)
N6-Acetyllysine (4)
N-(1-amino-1-oxo-3-phenylpropan-2-yl)-2-[[2-[(2-amino-3-phenylpropanoyl)amino]-4-methylsulfanylbutanoyl]amino]-5-(diaminomethylideneamino)pentanamide (4)
Phe-Gly (4)
Dimethylglycine (4)
5-Aminopentanoic acid (4)

First Public Date

2026 (474)
2025 (447)
2024 (427)
2023 (280)
2021 (222)
2022 (219)
2020 (200)
2019 (192)
2018 (149)
2017 (117)
2014 (106)
2016 (66)
2015 (57)
2013 (53)
2012 (1)

Classification

protozoa (6)
bacteria (4)
fungi (2)
viruses (2)

Modification

1x(15)N labeled L-leucine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (997)
RNA-seq of coding RNA (163)
Unknown experiment type (20)
Transcription profiling by RT-PCR (19)
Other (19)
ChIP-seq (18)
RNA-seq of non coding RNA (16)
RNA-seq of total RNA (15)
MicroRNA profiling by array (14)
Cell line - High-throughput sequencing (12)
DNA-seq (11)
Comparative genomic hybridization by array (10)
RNA-seq of coding RNA from single cells (10)
Transcription profiling by tiling array (8)
Methylation profiling by array (6)
ChIP-chip by tiling array (4)
Cell line - One-color microarray (4)
RNAi profiling by array (4)
RIP-seq (3)
Cell line - Two-color microarray (2)
One-color microarray (2)
Animal - Single-cell sequencing (2)
Human - High-throughput sequencing (2)
High-throughput sequencing (2)
Human - One-color microarray (2)
Animal - High-throughput sequencing (2)
Genotyping by array (2)
ATAC-seq (2)
Single nucleus RNA sequencing (2)
Transcription profiling by SAGE (1)

Release Date

2022 (454)
2023 (421)
2021 (405)
2020 (375)
2025 (331)
2015 (313)
2019 (308)
2014 (302)
2024 (294)
2018 (294)
2016 (293)
2013 (275)
2017 (245)
2012 (245)
2010 (236)
2011 (209)
2009 (141)
2008 (136)
2007 (83)
2006 (59)
2026 (55)
2005 (52)
2004 (41)
2003 (25)
2000 (17)
2002 (13)
1999 (10)
2001 (9)
1998 (5)
1997 (3)

Lab affiliation

Biochemistry Center Heidelberg, University of Heidelberg, Germany (4)
The Gade Research Group for Infection and Immunity, Department of Clinical Science, University of Bergen, Norway (3)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305, USA (2)
Stanford School of Medicine (2)
The Gade Research Group for Infection and Immunity, Department of Clinical Science, Faculty of Medicine and Dentistry, University of Bergen, Bergen, Norway (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands, 2 Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
Biochemistry Center Heidelberg (BZH) INF 328 69120 Heidelberg (1)
Biochemistry Center Heidelberg University of Heidelberg Germany (1)
Biomolecular Mass Spectrometry and Proteomics (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, the Netherlands (1)
Center for Proteomics and Metabolomics St. Jude Children's Research Hospital (1)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (1)
College of Fisheries, Huazhong Agricultural University (1)
College of Pharmacy, Gansu University of Chinese Medicine, Lanzhou, China (1)
Departement of Biology University of Fribourg (1)
Department of Geoscience, University of Calgary (1)
Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States (1)
Department of Molecular, Cellular, and Developmental Biology Yale University (1)
Department of Ophthalmology, Yangpu Hospital, School of Medicine, Tongji University, Shanghai 200090, China (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, 252 50, Vestec, Czech Republic (1)
Division of Genome Sciences and Cancer, The John Curtin School of Medical Research, The Australian National University, Canberra (1)
Gade Research Group for Infection and Immunity Dept. of Clinical Science, University of Bergen The Laboratory Building, 5th floor N-5021 Bergen, Norway (1)
Geisel School of Medicine at Dartmouth (1)
Head of Proteomics (1)
Henan Normal University,China (1)
Institute of Chemistry Slovak Academy of Sciences (1)
Institute of Functional Epigenetics Helmholtz Zentrum Muenchen Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH) Ingolstaedter Landstr. 1 85764 Neuherberg, Germany (1)
Institute of Molecular Biosciences, University of Graz, Graz, 8010, Austria (1)
Institute of Pharmaceutical Sciences, Pharmaceutical Chemistry, University of Graz, 8010 Graz, Austria and BioTechMed-Graz, Graz, Austria (1)

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The integrated stress response regulates 18S nonfunctional rRNA decay in mammals

Abstract - 18S nonfunctional rRNA decay (NRD) detects and eliminates translationally nonfunctional 18S rRNA. While this process is critical for ribosome quality control, the mechanisms underlying nonfunctional 18S rRNA turnover remain elusive, particularly in mammals. Here, we show that mammalian 18...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2024-12-09 | MSV000096620 | MassIVE

Pytheas S. cerevisiae 18S rRNA sample analysis

Mass spectrometry remains an important method for analysis of modified nucleosides ubiquitously present in cellular RNAs, in particular for ribosomal and transfer RNAs that play crucial roles in mRNA translation and decoding. Furthermore, modifications have effect on the lifetimes of nucleic acids i...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2022-05-04 | PXD030563 | Pride

Atypical U3 snoRNA Suppresses the Process of Pterygia through Modulating 18S Ribosomal RNA Synthesis

Ribosome biosynthesis plays a crucial role in regulating protein translation and is essential for cell growth and development in physiological progress. The progression and recurrence of Pterygia mainly occur due to the abnormal proliferation and migration of stromal Pterygia fibroblasts. Small nucl...

ORGANISM(S): Homo sapiens (Human)

2022-05-20 | PXD030801 | Pride

Pterygium U3 snorna 47s rrna 18s rrna 5' ets Ribosome biosynthesis

sediment 18S

sediment 18S Raw sequence reads

PRJNA1495542 | ENA

miceoalgae_bacterial 18s

miceoalgae_bacterial 18s Raw sequence reads

PRJNA820323 | ENA

Klebsiella pneumoniae strain:18S

Klebsiella pneumoniae strain:18S Genome sequencing

PRJNA1291179 | ENA