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MetabolomicsStudy on root metabolism of cassava TRV-MeCOMT8

This project is based on non targeted metabolomics analysis of cassava (Manihot esculenta) root samples. LC-MS/MS is used to obtain metabolite characteristic peaks and perform peak extraction, alignment, and quantification. Differential metabolites are screened, with a focus on flavonoid and phen...

2026-05-06 | MTBLS14086 | MetaboLights
ProteomicsUncovering protein regulation during adventitious root formation in Platycladus orientalis cuttings
Cell totipotency and pluripotency are the cellular basis for root regeneration in Platycladus orientalis cuttings, and the regeneration of adventitious roots is a key determinant for improving stem-cutting. However, the cellular basis and physiological regulation of adventitious root formation are s...
ORGANISM(S): Platycladus Orientalis 
PXD052541 |
TranscriptomicsThe cytokinin type-B response regulator PtRR13 is a negative regulator of adventitious root development in Populus
Adventitious root formation at the base of plant cuttings is an innate de novo organogenesis process that allows massive vegetative propagation of many economically and ecologically important species. The early molecular events following shoot excision are not well understood. Using whole-genome mic...
ORGANISM(S): Populus tremula x Populus alba 
2010-06-21 | E-GEOD-15049 | biostudies-arrayexpress
ProteomicsProteomic Analysis Reveals Key Proteins Involved in Ethylene-Induced Adventitious Root Development in Cucumber (Cucumis sativus L.)
Ethylene, as a signaling hormone molecule, is proved to have essential role in the process of root development. In the present study, cucumber (Cucumis sativus L.) seedlings were employed to estimate differentially expressed proteins (DEPs) during the adventitious rooting using iTRAQ technique and p...
ORGANISM(S): Cucumis sativus Brassica napus (Rape) 
2020-01-15 | PXD016444 | Pride
Ethylene  adventitious root  proteomics  ethylene synthesis  photosynthetic carbon assimilation 
TranscriptomicsNodal Root Bud Development - Transcriptome Analysis
Bioenergy sorghum’s large and deep nodal root system and associated microbiome enables uptake of water and nutrients from and deposition of soil organic carbon into soil profiles, key contributors to the crop’s resilience and sustainability. The goal of this study was to increase our understanding o...
ORGANISM(S): Sorghum bicolor 
2025-05-10 | E-MTAB-15090 | biostudies-arrayexpress
TranscriptomicsTranscriptomics of lateral root initiation in Maize
We developed a method to synchronize the induction of lateral roots in primary and adventitious roots of Zea mays, and used it to perform a genome-wide transcriptome analysis of the pericycle cells in front of the phloem poles during lateral root initiation. Lateral roots were induced in primary and...
ORGANISM(S): Zea mays 
2013-07-16 | E-GEOD-45691 | biostudies-arrayexpress
ProteomicsA proteomics analysis of adventitious root formation after leaf removal in lotus (Nelumbo nucifera Gaertn.)
Lotus (Nelumbo nucifera Gaertn) belongs to the family Nymphaeaceae, and is a popular aquatic vegetable that is rich in nutrients. It is widely cultivated in China, and many varieties of lotus are used for different purposes, suited to different climates, and consumed in different ways. Lotus is comm...
ORGANISM(S): Nelumbo nucifera subsp. nucifera 
2022-02-23 | PXD006883 | Pride
Adventitious root Leaf removal Protein Qpcr Lotus root Itraq 
TranscriptomicsGene expression profiling during adventitious root formation in carnation stem cuttings
We analysed the expression profile of genes involved in adventitious root formation in carnation cuttings in response to exogenous auxin.
ORGANISM(S): Dianthus caryophyllus 
2015-09-01 | E-MTAB-3698 | biostudies-arrayexpress
TranscriptomicsAdventitious root formation in Populus trichocarpa involves complex cellular events
Stem cuttings of P. trichocarpa (clone 101-74) were rooted in liquid medium without growth regulators (basal medium). The first emerging roots were observed on cuttings 6 days after the start of culture. The highest average root number per cutting (10 ± 2 roots/cutting) was obtained after 14 days. ...
ORGANISM(S): Populus trichocarpa 
2012-11-01 | E-GEOD-34096 | biostudies-arrayexpress
TranscriptomicsTranscriptome dynamics during adventitious root formation in cuttings of Cryptomeria japonica D.Don
To reveal transcriptome dynamics during adventitious root formation in a coniferous tree, C. japonica, we conducted custom microarry experiments. Three parts from cuttings of easy-to-root clone of C. japonica were collected at eight time points during adventitious root formation. The results reveale...
ORGANISM(S): Cryptomeria japonica 
2018-12-25 | GSE102874 | GEO
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