antigen test - OmicsDI

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Transcriptomics (6682)
Unknown (4985)
Genomics (574)
Proteomics (311)
Metabolomics (206)
Clinical (14)
Other (13)
Genomic (10)
Models (3)
Methylation profiling (1)

Organisms

Homo sapiens (2861)
Mus musculus (1884)
Rattus norvegicus (309)
Drosophila melanogaster (233)
Arabidopsis thaliana (160)
Saccharomyces cerevisiae (145)
Caenorhabditis elegans (104)
Danio rerio (81)
Bos taurus (67)
Sus scrofa (63)
Gallus gallus (47)
Oryza sativa (34)
Escherichia coli (32)
Zea mays (26)
Schizosaccharomyces pombe (24)
Macaca mulatta (24)
Candida albicans (23)
Streptococcus pneumoniae D39 (23)
Ovis aries (21)
Staphylococcus aureus (20)
Canis lupus familiaris (18)
Mycobacterium tuberculosis (16)
Salmo salar (15)
Oncorhynchus mykiss (15)
Oryza sativa Japonica Group (14)
Pimephales promelas (12)
Glycine max (12)
Shewanella piezotolerans WP3 (11)
Rhizobium leguminosarum (10)
Mammalia (1)

Organisms

Homo sapiens (112)
Mus musculus (68)
Bos taurus (5)
Macaca mulatta (4)
Danio rerio (4)
Pimephales promelas (2)
Macaca fascicularis (2)
Oncorhynchus mykiss (2)
Rattus norvegicus (2)
Gallus gallus (2)
Theileria equi (1)
Yersinia pseudotuberculosis YPIII (1)
Lactobacillus delbrueckii subsp. lactis (1)
Homo sapiens/Mus musculus xenograft (1)
Viruses (1)
Clostridioides difficile (1)
Campylobacter jejuni (1)
Cicer arietinum (1)
Anser cygnoides (1)
Oryza sativa (1)
Escherichia coli (1)

Repository

biostudies-arrayexpress (6879)
ENA (253)
MetaboLights (205)
pride (166)
geo (118)
EGA (95)
MassIVE (48)
iProX (18)
jPOST (13)
dbGaP (10)
EVA (3)
Cell Collective (2)
BioModels (1)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (36)
B cell (17)
T cell (17)
Blood (10)
Macrophage (10)
Brain (8)
Epithelial cell (8)
Permanent cell line cell (7)
Dendritic cell (6)
Kidney (6)
Spleen (6)
Urine (6)
Blood cell (5)
Blood plasma (5)
Blood serum (5)
Monocyte (5)
JURKAT cell (4)
Lung (4)
Mucosal invariant T cell (4)
Skin (4)
Cell suspension culture (3)
HeLa cell (3)
Liver (3)
Primary cell (3)
Embryo (2)
Kidney epithelial cell (2)
Lymph node (2)
Neuron (2)
Neutrophil (2)
B-lymphocyte (1)

Disease

Normal (16)
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Tuberculosis (3)
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Hypertension (2)
Apparently healthy (2)
Primary tumor (2)
Leukemia (2)
Normal (2)
Reference (2)
Mammary tumor (2)
Prostate carcinoma (2)
Multiple myeloma (2)
XCGD (1)
Testicular seminoma (1)
CLL (1)
Cytomegalovirus seropositive (1)
Arrhythmias and right ventricular dysfunction (1)
GIP-dependent Cushing's syndrome (1)
Mild spinal cord injury (1)
HPV positive (1)
HIV encephalitis (1)
Osteosarcoma subtype fibroblastic (1)
High grade glioblastoma (1)
Cocaine addiction (1)
HIV-1 seropositive (1)
Primary effusion lymphoma (PEL) (1)
Early-life seizures (1)
DNA damage (1)
Mantle cell lymphoma (1)

Technology Type

Mass Spectrometry (166)
Mass spectrometry (137)
Shotgun proteomics (92)
Mass spectrometry assay (59)
Bottom-up proteomics (38)
Affinity purification coupled with mass spectrometry proteomics (19)
Data-dependent acquisition (18)
Data-independent acquisition (11)
NMR spectroscopy (10)
SWATH MS (6)
Gel-based experiment (5)
SRM/MRM (4)
MSE (3)
ILLUMINA, Illumina HiSeq 2000 (2)
DiaPASEF (2)
Mass spectrometry imaging (2)
Top-down proteomics (2)
NextSeq 500, ILLUMINA (1)
Codelink Human Whole Genome Bioarray (1)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, NextSeq 500 (1)
Illumina Exome 250K (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II (1)
Illumina Genome Analyzer IIx (1)
Affymetrix 6.0 (1)
Illumina HiSeq 2000 (1)
Unknown (1)
Illumina MiSeq (1)

Instrument Platform

Illumina NovaSeq 6000 (105)
NextSeq 500 (47)
Illumina HiSeq 2500 (37)
Illumina HiSeq 4000 (34)
Illumina HiSeq 2000 (33)
Illumina NovaSeq X (11)
NextSeq 550 (10)
Illumina Genome Analyzer II (6)
GenePix 4000B [Axon Instruments] (5)
Illumina MiSeq (5)
Agilent High resolution C scanner (4)
Scanning hardware (4)
NA (4)
NextSeq 2000 (4)
DNBSEQ-G400 (4)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
Maxwell 16 LEV-plant RNA kit (3)
G2565AA DNA microarray scanner [Agilent] (3)
Ion Torrent Proton (3)
Illumina HiSeq 1500 (3)
Illumina HiSeq 3000 (3)
MACS (2)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (2)
Agilent 2100 Bioanalyzer (2)
Illumina Genome Analyzer (2)
ScanArray Lite [PerkinElmer] (2)
Other (2)
ScanArray 5000 [PerkinElmer] (2)
GenePix 4000A [Axon Instruments] (2)
HP GeneArray [Affymetrix/HP] (2)

Publication Date

2010 (1032)
2015 (978)
2013 (967)
2011 (782)
2014 (729)
2012 (726)
2008 (350)
2016 (315)
2009 (299)
2025 (192)
2007 (162)
2026 (143)
2022 (114)
2024 (101)
2023 (95)
2021 (83)
2006 (68)
2005 (68)
2017 (58)
2020 (55)
2018 (52)
2019 (41)
2004 (24)
2003 (10)
2002 (3)
2027 (2)

CHEBI ID

CHEBI:30769 (40)
CHEBI:15891 (37)
CHEBI:15756 (36)
CHEBI:17368 (35)
CHEBI:16704 (34)
CHEBI:16919 (34)
CHEBI:15741 (32)
CHEBI:17596 (32)
CHEBI:7916 (30)
CHEBI:16737 (30)
CHEBI:18257 (29)
CHEBI:16708 (29)
CHEBI:28875 (29)
CHEBI:17154 (29)
CHEBI:17351 (29)
CHEBI:15428 (28)
CHEBI:17568 (28)
CHEBI:15354 (28)
CHEBI:25017 (27)
CHEBI:28842 (27)
CHEBI:16196 (27)
CHEBI:28716 (27)
CHEBI:30805 (26)
CHEBI:25094 (26)
CHEBI:18237 (26)
CHEBI:17750 (26)
CHEBI:18012 (26)
CHEBI:16027 (26)
CHEBI:17191 (26)
CHEBI:17895 (26)

Metabolite Name

Hypoxanthine (49)
Uridine (47)
Inosine (46)
Taurine (45)
Creatine (42)
Xanthine (41)
Adenine (40)
Uracil (38)
Choline (38)
L-Phenylalanine (38)
Creatinine (37)
Guanine (36)
Guanosine (36)
Citrulline (35)
Uric acid (35)
Thymidine (35)
L-Tyrosine (35)
Ornithine (34)
Adenosine (34)
Cytosine (34)
Cytidine (34)
Pantothenic acid (33)
L-Histidine (33)
Citric acid (33)
Palmitic acid (33)
Thymine (32)
Riboflavin (32)
Indole (31)
Azelaic acid (31)
Linoleic acid (30)

First Public Date

2025 (42)
2014 (42)
2026 (29)
2023 (27)
2022 (23)
2024 (19)
2020 (17)
2019 (16)
2021 (14)
2016 (7)
2015 (5)
2013 (5)
2018 (4)
2017 (3)

Modelling Approach

Ordinary differential equation model (1)

Study status

Completed (7)
Terminated (2)
Active, not recruiting (2)
Withdrawn (1)
Not provided (1)
Recruiting (1)

Lab affiliation

Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
University of Victoria (3)
Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology, University of Freiburg, 79104 Freiburg, Germany (2)
Department of Chemistry, National and Kapodistrian University of Athens, 15784 Zografou, Greece (2)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (2)
Faculty of Chemistry and Center for Synthetic Microbiology (SYNMIKRO) Head of the Core-Facility for Mass Spectrometry Marburg University Hans-Meerwein-Str. 4 35032 Marburg GERMANY (2)
Institute of Lung Biology and Disease and Comprehensive Pneumology Center, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, German (2)
Lab. Neuro-Oncology and Clinical Cancer Proteomics, Erasmus Medical Center, the Netherlands (2)
Zhejiang University (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2 Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1 Children’s Cancer and Blood Foundation Laboratories, Departments of Pediatrics, and Cell and Developmental Biology, Drukier Institute for Children’s Health, Meyer Cancer Center, Weill Cornell Medicine, New York, NY, USA (1)
1.Precision Vaccines Program, Division of Infectious Diseases, Boston Children’s Hospital, Boston, MA, USA. 2. Department of Pediatrics, Harvard Medical School, Boston, MA, USA. (1)
1Arkana Laboratories, 10810 Executive Center Drive #100, Little Rock, AR 72211 (1)
1Departments of Medicine & 2Pathology, Case Western Reserve University and University Hospitals Case Medical Center; 3Department of Molecular Biology & Microbiology Case Western Reserve University School of Medicine, Cleveland, Ohio 44106,USA. (1)
1Research Unit Protein Science and Metabolomics and Proteomics Core, Helmholtz Zentrum München, German Research Center for Environmental Health, D-85764 Neuherberg, Germany (1)
Arkana Laboratories, Little Rock, Arkansas, USA (1)
Assistant Professor, Pediatrics-Heme/Onc and Bone Marrow Transplantation (1)
Associate Professor of Medicine, Division of Infectious Diseases, Department of Medicine, Washington Univerisity in St Louis (1)
Ben May Department of Cancer Research, University of Chicago (1)
Biological Mass Spectrometry Facility, Center for Biomedical Research Support, The University of Austin at Texas (1)
Biotech Research and Innovation Centre (BRIC), Faculty of Health and Medical Sciences, University of Copenhagen (1)
Brown University, MCB Department (1)
Cancer Precision Medicine Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, QLD, 4006, Australia. (1)
Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK (1)
Cellular Biology Department, Oxidative Stress and Neurodegeneration group, Ciudad Real Medical School, Castilla-La Mancha University (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center Leiden, the Netherlands (1)
Center of experimental therapeutics Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Centre de recherche Agora Rue du Bugnon 25A CH-1005 Lausanne (1)
Centre for Infectious Diseases, Heidelberg University Hospital, Heidelberg, Germany (1)
Chan Zuckerberg Biohub, Stanford, CA 94025, USA (1)
Cutaneous Oncology and Immunology Moffitt Cancer Center Tampa, FL, USA (1)

Keyword

Immunotherapy (3)
Cetuximab (2)
Guaiac fecal occult blood test (1)
Helicobacter pylori stool antigen test (1)
Bidirectional endoscopy (1)
Adenocarcinoma, (1)
Colorectal tumors, (1)
Endogenous porphyrins, (1)
Fluorescence, (1)
Tumor markers. (1)
Peptide-loaded Dendritic cell product (1)
Dendritic cell vaccination (1)
MSI-high colorectal cancer (CRC) (1)
Germline MMR-gene mutation without disease criteria of CRC (1)
Adnab-9 (1)
Barium enema (1)
Dendritic cells (1)
Well Tolerated Agent (1)
Pancreas and Liver Resections (1)
Recurrence-Free Survival (1)
Second line (1)
Vaccine (1)
Flexible sigmoidoscopy (1)
FOBT (1)
Fecal immunochemical test (1)
Stool (1)
Vaccines (1)
FIT (1)
Carcinoembryonic antigen (1)
Erbitux (1)

IsPrivate

False (1)

Classification

bacteria (4)
viruses (1)
protozoa (1)

Modification

4-dinitrophenyl modified residue (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (4668)
RNA-seq of coding RNA (681)
ChIP-chip by tiling array (258)
Comparative genomic hybridization by array (202)
ChIP-seq (177)
Unknown experiment type (172)
RNA-seq of non coding RNA (121)
Methylation profiling by array (92)
Other (87)
Proteomic profiling by array (62)
Transcription profiling by RT-PCR (57)
RNA-seq of coding RNA from single cells (40)
ChIP-chip by array (36)
Transcription profiling by SAGE (33)
Transcription profiling by tiling array (26)
Methylation profiling by high throughput sequencing (22)
Genotyping by array (15)
ATAC-seq (10)
DNA-seq (10)
MicroRNA profiling by array (8)
RNA-seq of total RNA (8)
Animal - High-throughput sequencing (7)
Animal - One-color microarray (6)
High-throughput sequencing (6)
MicroRNA profiling by high throughput sequencing (6)
Cell line - High-throughput sequencing (5)
RNAi profiling by array (5)
Cell line - One-color microarray (4)
CUT&RUN (4)
Human - One-color microarray (3)

Release Date

2015 (1128)
2010 (1080)
2013 (1059)
2014 (875)
2011 (860)
2012 (810)
2022 (795)
2021 (649)
2023 (601)
2024 (514)
2025 (488)
2016 (473)
2020 (386)
2008 (385)
2009 (349)
2019 (301)
2018 (301)
2017 (246)
2007 (196)
2026 (91)
2005 (87)
2006 (77)
2004 (37)
2003 (18)
2001 (13)
2000 (13)
1999 (13)
2002 (11)
1998 (7)
1997 (1)

Location

United States (3)
Australia (3)
New Zealand (2)
Netherlands (2)
Iran (1)
Taiwan (1)
China (1)
Italy (1)
Japan (1)
France (1)

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Deep longitudinal multi-omics analysis of Bordetella pertussis cultivated in bioreactors highlights medium starvations and transitory metabolisms, associated to vaccine antigen biosynthesis variations and global virulence regulation

Bordetella pertussis is the bacterial causative agent of whooping cough, a serious respiratory illness. An extensive knowledge on its virulence regulation and metabolism is a key factor to ensure pertussis vaccine manufacturing process robustness. The aim of this study was to refine our ...

2023-02-21 | MTBLS5762 | MetaboLights

Single-cell transcriptome and T cell receptor profiling of the tuberculin skin test

We undertook single cell RNA, TCR and antibody-derived tag (ADT) sequencing of human skin suction blisters induced at the site of of the tuberculin skin test on day 2. This submission comprises data from 31 individuals (9 male, 22 female) with immunological memory to mycobacterial antigens. TotalSeq...

ORGANISM(S): Homo sapiens

2026-07-09 | E-MTAB-14246 | biostudies-arrayexpress

Activity of the Bacillus anthracis 20 kDa protective antigen component

Edema factor of anthrax binds to the protective antigen (PA83) which cleaves to PA63 and PA20. The role of PA20 was examined using highthroughput gene expression analysis of human peripheral blood mononuclear cells (PBMC) exposed to PA20. Keywords: Toxicity determination PBMC obtained from differe...

ORGANISM(S): Homo sapiens

2008-08-26 | E-GEOD-12533 | biostudies-arrayexpress

Non-SARS-CoV-2 respiratory viral detection and whole genome sequencing from COVID-19 rapid antigen test devices

Respiratory virus detection from rapid antigen tests

PRJEB67729 | ENA

Bulk RNA sequencing of day 2 and day 7 biopsies from the tuberculin skin test in people with latent tuberculosis

We used the tuberculin skin test (TST) as human challenge model to study the temporal evolution of the immune response to Mycobacterium tuberculosis (Mtb) antigens in vivo. Study participants comprised healthy HIV seronegative adults, 18-60 years of age. Latent tuberculosis (TB) infection was define...

ORGANISM(S): Homo sapiens

2025-12-18 | E-MTAB-14687 | biostudies-arrayexpress

Genomic Comparison of the O-antigen Biosynthesis Gene Clusters of E. coli O55 Strains Belonging to Three Lineages.

Typical enteropathogenic Escherichia coli (EPEC) O55:H7 is regarded as the closest relative of enterohemorrhagic E. coli (EHEC) O157:H7. Both serotypes usually express the Î³1 intimin subclass and trigger actin polymerazation by the Tir-TccP pathway. However, atypical O55:H7 strains capable of trigg...

ORGANISM(S): Escherichia coli

2010-05-22 | E-GEOD-8889 | biostudies-arrayexpress

Rapid Acceleration of Diagnostics - Tech (RADx-TECH): 2183 SARS-CoV-2 Rapid Antigen Test

PRJNA776386 | ENA

Rapid Acceleration of Diagnostics - Tech (RADx-TECH): 2183 SARS-CoV-2 Rapid Antigen Test

PRJNA776385 | ENA

Cytokine-independent detection of antigen-specific germinal center T follicular helper (Tfh) cells in immunized non-human primates using a live cell Activation Induced Marker (AIM) technique

A range of current candidate AIDS vaccine regimens are focused on generating protective HIV neutralizing antibody responses. Many of these efforts rely on the rhesus macaque animal model. Understanding how protective antibody responses develop and how to increase their efficacy are both major knowle...

ORGANISM(S): Macaca mulatta

2016-09-07 | E-GEOD-81382 | biostudies-arrayexpress

Stem Cell Antigen-1 (Sca-1) Regulates Mammary Tumor Development and Cell Migration

Stem cell antigen-1 (Sca-1 or Ly6A) is a member of the Ly6 family of glycosyl phostidylinositol (GPI)-anchored cell surface proteins. To determine the potential mechanisms by which Sca-1 regulates cell migration, adhesion, and tumor development; we performed an Affymetrix mouse genome 430A 2.0 array...

ORGANISM(S): Mus musculus

2012-02-16 | E-GEOD-30684 | biostudies-arrayexpress

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