automation - OmicsDI

Show results for

Unknown (5776)
Proteomics (109)
Genomics (107)
Transcriptomics (95)
Metabolomics (20)
Other (3)
Models (2)
Clinical (2)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (95)
Alteromonadales (95)
Bacteria (95)
Canis lupus familiaris (95)
Carya cathayensis (95)
Ectopseudomonas oleovorans CECT 5344 (95)
Ensifer adhaerens (95)
Enterococcus faecalis (95)
Globicatella sanguinis (95)
Halictus scabiosae (95)
Histomonas meleagridis (95)
Human immunodeficiency virus 1 (95)
Mesocricetus auratus (95)
Homo sapiens (91)
Mus musculus (13)
Escherichia coli (9)
Drosophila melanogaster (7)
Saccharomyces cerevisiae (3)
cellular organisms (2)
Rattus norvegicus (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Oryzias latipes (1)
Chaetoceros decipiens (1)
Salmo salar (1)
Hordeum vulgare subsp. vulgare (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Arabidopsis thaliana (1)
Bos taurus (1)
human oral bacteria ensemble (1)

Organisms

Homo sapiens (30)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Escherichia coli str. K-12 substr. MDS42 (1)
medical device metagenome (1)
Oryza sativa (1)
air metagenome (1)
Escherichia coli (1)
Plasmodium falciparum (1)
Saccharomyces cerevisiae (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (95)
pride (95)
ENA (79)
geo (27)
MetaboLights (19)
MassIVE (9)
EGA (3)
iProX (3)
BioModels (2)
GNPS (1)
GPMDB (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Cell culture (17)
HeLa cell (6)
Permanent cell line cell (6)
Epithelial cell (5)
Blood plasma (4)
Brain (4)
Cell suspension culture (4)
Lung (4)
Cerebrospinal fluid (3)
Leaf (3)
Blood (2)
T cell (2)
B cell (1)
Blood cell (1)
Blood platelet (1)
Breast (1)
Cardiocyte differentiation (1)
Epithelial cell of pancreas (1)
Fibroblast (1)
H9c2 cell (1)
Heart (1)
Kidney (1)
Liver (1)
Macrophage (1)
Mesenchyme of mammary gland (1)
Muscle (1)
Pancreas (1)
Plant cell (1)
Platelet (1)
Serum (1)

Disease

Breast cancer (2)
Pancreatic ductal adenocarcinoma (2)
Multiple sclerosis (1)
Inflammatory bowel disease (1)
Rectal Neoplasms (1)
Not Available (1)
Acute leukemia (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Charcot-Marie-Tooth disease (1)
Colon cancer (1)
Disease free (1)
Glioblastoma (1)
Lung cancer (1)
Lymphoma (1)
Melanoma (1)
Mixed disorder as reaction to stress (1)
Non-small cell lung carcinoma (1)
Prostate adenocarcinoma (1)
Spinal muscular atrophy (1)
Syndrome (1)
Triple-receptor negative breast cancer (1)
Tuberculosis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (95)
Bottom-up proteomics (31)
Shotgun proteomics (30)
Data-independent acquisition (17)
Mass spectrometry (10)
HDMSE (9)
SWATH MS (7)
NMR spectroscopy (6)
Gel-based experiment (6)
MSE (5)
Top-down proteomics (5)
Mass spectrometry assay (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
NMR spectroscopy assay (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
Illumina HiSeq 2000 (6)
NextSeq 500 (6)
Orbitrap Exploris 480 (4)
TimsTOF Pro (3)
Q Exactive (3)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 3000 (2)
Illumina HiSeq 4000 (2)
High-performance computing workstation (1)
Protocol computer workstation running R statistical software (1)
Thermal cycler (PCR); Covaris ME220 focused ultrasonicator; magnetic separation rack; Agilent TapeStation system (D5000 and D1000 ScreenTape assays); Qubit fluorometer or equivalent; microcentrifuge. (1)
JANUS® G3 MDT automated liquid handling workstation (PerkinElmer); thermal cycler or incubator (42 °C); Zymo DNA Clean & Concentrator columns; AMPure XP magnetic bead purification system; magnetic separation rack. (1)
Multichannel pipettes or automated liquid handler; 384-well tissue culture plates; Class II biological safety cabinet; CO₂ incubator (37 °C, 5% CO₂). (1)
Illumina TruSeq Stranded Total RNA kit, Biomek FxP (Beckman Coulter) (1)
Agilent Bioanalyzer 2100 system (Agilent Technologies, California, USA) (1)
G2565BA DNA microarray scanner (1)
OpenArray NT cycler (1)
PCR Applied Biosystems (1)
Qubit (1)
Illumina HiSeq (1)
Illumina Genome Analyzer II (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
TimsTOF Pro 2 (1)
TripleTOF 5600 (1)

Publication Date

2025 (40)
2026 (29)
2023 (20)
2024 (18)
2021 (18)
2020 (18)
2013 (18)
2014 (14)
2022 (14)
2015 (11)
2011 (11)
2018 (8)
2016 (7)
2010 (7)
2019 (5)
2012 (5)
2017 (4)
2008 (2)
2009 (1)
2006 (1)

UNIPROT ID/AC

Q9NZS9 (1)
P21580 (1)
Q12933 (1)
Q15628 (1)
Q13546 (1)
P19438 (1)
P01375 (1)
O15111 (1)
P25963 (1)
Q13158 (1)
P98170 (1)
P55212 (1)
P42574 (1)
Q14790 (1)
O15519 (1)
P19838 (1)
P09874 (1)

ENSEMBL ID

ENST00000309955 (1)
ENST00000371199 (1)
ENST00000216797 (1)
ENST00000237289 (1)

CHEBI ID

CHEBI:16449 (5)
CHEBI:18186 (4)
CHEBI:17234 (4)
CHEBI:25017 (4)
CHEBI:28044 (4)
CHEBI:27266 (4)
CHEBI:17992 (3)
CHEBI:22660 (3)
CHEBI:30751 (3)
CHEBI:28300 (3)
CHEBI:24898 (3)
CHEBI:18123 (3)
CHEBI:78320 (3)
CHEBI:15354 (3)
CHEBI:17368 (3)
CHEBI:30769 (3)
CHEBI:82912 (2)
CHEBI:33942 (2)
CHEBI:15611 (2)
CHEBI:16927 (2)
CHEBI:26271 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:22653 (2)
CHEBI:27570 (2)
CHEBI:28757 (2)
CHEBI:37684 (2)
CHEBI:26986 (2)
CHEBI:16811 (2)
CHEBI:17170 (2)

Metabolite Name

Alanine (4)
Lactate (3)
Citric acid (3)
Phenylalanine (3)
Ribonic acid (2)
Ribose (2)
Leucine (2)
Hypoxanthine (2)
Formate (2)
Glucose (2)
Succinate (2)
Valine (2)
Leucine (2)
Acetaminophen (2)
Dimethylamine (2)
Uracil (2)
Valine (2)
Pyroglutamic acid (2)
Glutathione (2)
Putrescine (2)
L-Histidine (2)
Choline (2)
Fumaric acid (2)
Myo-Inositol (2)
Malic acid (2)
Asparagine (2)
Tyrosine (2)
Fructose (2)
Butyrylcarnitine (2)
Threonine (2)

First Public Date

2024 (13)
2026 (9)
2023 (9)
2021 (9)
2025 (6)
2022 (6)
2020 (6)
2017 (6)
2018 (5)
2019 (3)
2016 (3)
2014 (3)
2015 (1)

Modelling Approach

Ordinary differential equation model (2)

Study status

Completed (2)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (9)
School of Automation and Intelligent Sensing, Shanghai Jiao Tong University (5)
Biognosys AG (4)
Proteomics, Metabolomics and Mass Spectrometry Laboratory,ISPAAM, National Research Council, P.le E. Fermi 1, 80055 Portici, Italy (2)
University of Montpellier, Institut de Génomique Fonctionnelle, France (2)
Biochemistry, Baylor College of Medicine (1)
Bioinformatics Core, Weill Cornell Medicine-Qatar (1)
Biomedical Proteomics Platform, Department of Health Sciences and Technology, ETH Zurich, 8093 Zurich, Switzerland Institute of Molecular Systems Biology at the Department of Biology, ETH Zurich, Zurich 8093, Switzerland (1)
Brown University MCB Department (1)
Brown University, MCB Department (1)
Cancer Research UK Manchester Institute (1)
Cell Biology Harvard Medical School Boston, MA 02115 (1)
Cell Biology Harvard Medical School USA (1)
Cell Culture Technology, Technical Faculty, Bielefeld University, Germany (1)
Center for Precision Medicine at Wake Forest University School of Medicine (1)
Cereal Genomics, Department of Genetics, Faculty of AgriSciences, University of Stellenbosch (1)
Chan Zuckerberg Biohub (1)
Clemens Schöpf Institute, Department of Chemistry, Technical University of Darmstadt, Peter-Grünberg-Straße 4, 64287 Darmstadt, Germany (1)
Department of Biochemistry and Molecular Biology, University of Calgary, AB, Canada (1)
Department of Biochemistry and Pharmacology, University of Melbourne, Parkville, VIC 3010, Australia (1)
Department of Biological Sciences, Department of Chemistry, Vanderbilt University. Department of Pathology, Microbiology and Immunology, Vandberbilt University Medical Center (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (1)
Department of Chemistry and Biochemistry, The University of Texas at Dallas (1)
Department of Chemistry and Institutes of Biomedical Sciences, Fudan University (1)
Department of Chemistry, Clemens-Schöpf-Institute of Chemistry and Biochemistry, Technical University of Darmstadt, Peter-Grünberg-Strasse 4, 64287 Darmstadt, Germany (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (1)
Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany (1)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, United States (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (1)
Division of Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)

Keyword

Electric tubular anastomotic device (1)

IsPrivate

False (2)

Classification

bacteria (4)
protozoa (1)

Modification

N6 (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (24)
ChIP-seq (12)
Transcription profiling by RT-PCR (3)
Genotyping by array (2)
Comparative genomic hybridization by array (2)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Interventional (2)
Human - Two-color microarray (1)
MeDIP-seq (1)
Human - Methylation microarray (1)
Exome sequencing (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (852)
2022 (750)
2023 (728)
2024 (664)
2021 (582)
2020 (426)
2019 (344)
2018 (312)
2017 (206)
2016 (192)
2015 (173)
2026 (151)
2014 (106)
2013 (95)
2011 (64)
2012 (55)
2010 (38)
2009 (28)
2007 (26)
2008 (23)
2006 (13)
2005 (11)
2002 (8)
2004 (7)
2003 (7)
2001 (6)
2000 (3)
1997 (1)

Location

Iran (1)
China (1)

Previous page
1 / 612
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 612
Next page

Sort by:

Relevance

Page size

Enhancing human kidney organoid differentiation from pluripotent stem cells with high-throughput automation

PRJNA431788 | ENA

A conceptual framework for automation disengagements.

Not available

S-EPMC11018869 | biostudies-literature

3D-printed microfluidic automation.

Not available

S-EPMC4382387 | biostudies-literature

Automation, workers' skills and job satisfaction.

Not available

S-EPMC7703879 | biostudies-literature

Automating checks of plan check automation.

Not available

S-EPMC7678958 | biostudies-literature

Enhancing human kidney organoid differentiation from pluripotent stem cells with high-throughput automation

Organoids derived from human pluripotent stem cells are a potentially powerful tool for high-throughput screening (HTS), but the complexity of organoid cultures poses a significant challenge for miniaturization and automation. In this study, single-cell RNA sequencing identify within organoids previ...

ORGANISM(S): Homo sapiens

2018-05-17 | GSE109718 | GEO

How do humans learn about the reliability of automation?

Not available

S-EPMC10869332 | biostudies-literature

Occupational mobility and automation: a data-driven network model.

Not available

S-EPMC7879770 | biostudies-literature

Cytoscape Automation: empowering workflow-based network analysis.

Not available

S-EPMC6717989 | biostudies-literature

Automation assisted anaerobic phenotyping for metabolic engineering.