basidiomycetes - OmicsDI

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Transcriptomics (1108)
Unknown (447)
Genomics (403)
Proteomics (6)
Models (3)
Metabolomics (2)

Organisms

Drosophila melanogaster (1165)
Mus musculus (59)
Homo sapiens (46)
Drosophila simulans (14)
Drosophila pseudoobscura (11)
Arabidopsis thaliana (8)
Drosophila yakuba (7)
Bombyx mori (5)
Drosophila virilis (5)
synthetic construct (5)
Caenorhabditis elegans (5)
Coprinopsis cinerea (5)
Schizosaccharomyces pombe (4)
Rhodotorula toruloides (3)
Cryptococcus neoformans (3)
Drosophila willistoni (2)
Aplysia californica (2)
Schizophyllum commune (2)
Drosophila mojavensis (2)
Drosophila (2)
Heliconius melpomene (2)
Danio rerio (2)
Wolfiporia cocos (2)
Phlebiopsis gigantea (2)
Volvariella volvacea (2)
Drosophila mauritiana (1)
Agaricus bisporus (1)
Drosophila rhopaloa (1)
Drosophila ficusphila (1)
Invertebrate iridescent virus 6 (1)

Organisms

Trametes elegans (3)
Pleurocybella porrigens (3)
Ganoderma lucidum (3)
Trametes cingulata (2)
Trametopsis cervina (2)
Cubamyces sp. BRFM 1775 (2)
Cerrena unicolor 303 (2)
Pilatotrama ljubarskyi (2)
Trametes coccinea (2)
Trametes coccinea BRFM310 (2)
Lentinus brumalis (2)
Trametes sanguinea (2)
Dichomitus squalens (2)
Phanerochaete sordida (2)
Botryobasidium botryosum (1)
Cladonia rei (1)
Quambalaria eucalypti (1)
Eulophia maculata (1)
Trametes punicea (1)
Ganoderma sinense (1)
Agaricus bisporus var. bisporus (1)
Cryptococcus amylolentus (1)
Rhodonia placenta (1)
Phlebiopsis gigantea (1)
Trametes cinnabarina (1)
Paxillus involutus (1)
Volvariella volvacea (1)
Inonotus obliquus (1)
Meghimatium fruhstorferi (1)
Hypsizygus marmoreus (1)

Repository

biostudies-arrayexpress (1396)
ENA (96)
geo (19)
BioModels (3)
pride (3)
MassIVE (2)
GNPS (1)
jPOST (1)
MetaboLights (1)

Tissue

Bark (1)

Disease

Normal (5)
Fungal infectious disease (1)

Technology Type

Mass Spectrometry (3)
Mass spectrometry (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Bottom-up proteomics (1)
Shotgun proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (14)
NextSeq 500 (13)
Illumina HiSeq 2500 (7)
Illumina HiSeq 4000 (6)
AB SOLiD 4 System (4)
Illumina Genome Analyzer II (4)
Illumina MiSeq (4)
Illumina HiSeq 3000 (4)
Illumina Genome Analyzer (3)
Illumina NovaSeq 6000 (3)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
FACS sorter (SONY SH800) (1)
Chromium Single Cell 3’ Reagent kits v2 (1)
10X Genomics Chromium Controller (1)
Illumina Genome Analyzer IIx;Illumina HiSeq 2000 (1)
Agilent Drosophila Gene Expression Microarray, 4x44K arrays; Agilent Microarray Hybridization Oven (G2545A) (1)
Agilent Scanner C (1)
Illumina HiSeq2000 (1)
NA (1)
Thermo Scientific Q-Exactive Plus (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2010 (220)
2013 (219)
2011 (185)
2012 (147)
2014 (137)
2015 (129)
2008 (97)
2016 (76)
2009 (64)
2007 (47)
2021 (22)
2020 (17)
2017 (14)
2018 (10)
2022 (9)
2005 (8)
2019 (7)
2006 (5)
2023 (4)
2024 (2)
2004 (2)
2025 (2)
2003 (1)

CHEBI ID

CHEBI:84651 (2)
CHEBI:88544 (2)
CHEBI:64522 (2)
CHEBI:77086 (2)
CHEBI:84644 (2)
CHEBI:73061 (2)
CHEBI:1 (2)
CHEBI:1879 (2)
CHEBI:58180 (2)
CHEBI:84424 (2)
CHEBI:52381 (2)
CHEBI:53027 (2)
CHEBI:53026 (2)
CHEBI:52385 (2)
CHEBI:52384 (2)
CHEBI:52389 (2)
CHEBI:52615 (2)
CHEBI:52388 (2)
CHEBI:49050 (2)
CHEBI:53040 (2)
CHEBI:52975 (2)
CHEBI:53039 (2)
CHEBI:53035 (2)
CHEBI:53048 (2)
CHEBI:53038 (2)
CHEBI:17309 (2)
CHEBI:53044 (2)
CHEBI:18162 (2)
CHEBI:53034 (2)
CHEBI:60449 (2)

Metabolite Name

Citalopram-N-Oxide (1)
1-dimethylarsinoyl-tricosane (1)
OHOOA-PG (1)
1-(2-methoxy-6Z-hexadecenyl)-sn-glycero-3-phosphoserine (1)
3,7-Dihydroxy-4,5-dimethoxy-8-prenylflavan 7-O-beta-D-glucopyranoside (1)
Methyl (methylthio)methyl disulfide (1)
Tetracaine N-oxide (1)
2-Hydroxy-3-methoxyestrone (3-Hydroxy-9Z-octadecenoylcarnitine) (1)
WIN VI (1)
(±)-Octanoylcarnitine (1)
IDFP (1)
4-Dimethylamino-L-phenylalanine (1)
9,13-dihydroxy-11-octadecenoic acid (1)
Longifolenaldehyde (1)
PC(18:4(9E,11E,13E,15E)/0:0) (1)
Chrysanthetriol (1)
17(R)-Resolvin D1 (1)
Suberohydroxamic Acid (1)
PHODiA-PC (1)
Istamycin A1 (1)
9,13-dihydroxy-10-octadecenoic acid (1)
1alpha,25-dihydroxy-24a-homo-22-thiavitamin D3 (1)
6-hydroxy-9Z,12Z-octadecadienoic acid (1)
14-epi-14-A4-NeuroP (1)
Fortimicin A (1)
PS(8:0/8:0) (1)
Cyflufenamid (1)
3,12-dihydroxy-pentadecanoic acid (1)
9,10-dihydroxy-12-octadecenoic acid (1)
PKODiA-PC (1)

IsPrivate

False (3)

Submitter Keywords

FROG (3)

First Public Date

2014 (23)
2020 (9)
2013 (9)
2018 (8)
2025 (7)
2024 (7)
2016 (6)
2026 (5)
2023 (5)
2019 (5)
2021 (4)
2022 (3)
2015 (3)
2017 (2)

Modelling Approach

Constraint-based model (3)

Study type

Transcription profiling by array (492)
ChIP-seq (288)
RNA-seq of coding RNA (223)
ChIP-chip by tiling array (112)
RNA-seq of non coding RNA (90)
Other (46)
Unknown experiment type (43)
Comparative genomic hybridization by array (20)
ChIP-chip by array (18)
Transcription profiling by tiling array (13)
DNA-seq (12)
Animal - High-throughput sequencing (8)
RNAi profiling by array (6)
RNA-seq of coding RNA from single cells (6)
Methylation profiling by high throughput sequencing (6)
Animal - One-color microarray (2)
CLIP-Seq (2)
Transcription profiling by RT-PCR (2)
Transcription profiling by SAGE (1)
Translation profiling (1)
Genotyping by array (1)
ATAC-seq (1)
Hi-C (1)
RIP-seq (1)
Methylation profiling by array (1)

Release Date

2013 (239)
2010 (233)
2011 (200)
2014 (159)
2012 (159)
2015 (143)
2008 (103)
2016 (94)
2009 (70)
2022 (60)
2007 (51)
2020 (50)
2023 (48)
2021 (46)
2018 (46)
2017 (31)
2024 (28)
2019 (27)
2025 (20)
2005 (14)
2006 (9)
2026 (4)
2004 (2)
2003 (2)
2002 (1)
2001 (1)
2000 (1)
1999 (1)
1997 (1)

Lab affiliation

National Research Council of Italy – Water Research Institute (CNR-IRSA) Molecular Ecology Group (MEG), Verbania, Italy (1)
Chalmers University of Technology (1)
Unité des Aspergillus 28, rue du Docteur Roux 75015 Paris (1)

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