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UnknownBlast2GO: A comprehensive suite for functional analysis in plant genomics.
Not available
S-EPMC2375974 | biostudies-literature
TranscriptomicsDe Novo Transcriptomic Analysis of Hydrogen Production in the Green Alga Chlamydomonas moewusii through RNA-Seq
Background: Microalgae can make a significant contribution towards meeting global renewable energy needs in both lipid-based liquid biofuel and hydrogen biofuel. The development of energy-related products and chemicals from algae could be accelerated with improvements in systems biology tools, and r...
ORGANISM(S): Chlamydomonas moewusii 
2013-09-04 | E-GEOD-46225 | biostudies-arrayexpress
ProteomicsTranscriptomics – assisted proteome profiling of black pepper (Piper nigrum L.)
This study was designed to evaluate the proteome profiles of Piper nigrum when challenged with three different biotic stress. We have utilized a transcriptome-assisted protein identification pipeline coupled with a BLAST2GO annotation.
ORGANISM(S): Piper nigrum 
2022-03-02 | PXD004008 | Pride
Nanoacquity uplc Lc-mse Piper nigrum Proteinlynx global server 
TranscriptomicsTransciptional response to acute thermal stress in Chinook salmon
Thermal stress is a serious and growing challenge facing Chinook salmon (Oncorhynchus tshawytscha) living in the southern portion of their native range. River alterations have increased the likelihood that juveniles will be exposed to warm water temperatures during their freshwater life stage, which...
ORGANISM(S): Oncorhynchus tshawytscha 
2015-07-25 | E-GEOD-59756 | biostudies-arrayexpress
ProteomicsTomato quantitative proteome - Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3
Identification of protease targets is essential to understand the molecular mechanism by which a protease regulates the biological processes. In this study, we applied an iTRAQ-based quantitative proteomic approach to identify the potential targets of a vacuolar processing enzyme in the cellular con...
ORGANISM(S): Solanum lycopersicum 
2017-02-20 | PXD002980 | Pride
Tomato Lc-ms/ms 
ProteomicsAKT/PACS2 participates in renal vascular hyperpermeability by regulating endothelial fatty acid oxidation in diabetic mice
HUVECs were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA) and cultured in an Endothelial Cell Medium (Invitrogen, Carlsbad, CA, USA) containing 5% fetal bovine serum at 37°C in a 5% CO2 incubator. Cells were treated with 30 mM glucose and 0.1 mM palmitic acid (P0500, ...
ORGANISM(S): Homo sapiens (Human) 
2022-08-12 | PXD033227 | Pride
Pacs2 Diabetes Endoplasmic reticulum Mitochondria Fatty acid oxidation Endothelial cell Vascular permeability 
UnknownComplete genome sequence of a giant Vibrio phage ValKK3 infecting Vibrio alginolyticus.
Not available
S-EPMC4832046 | biostudies-literature
ProteomicsProteomic analysis of the major alkali-soluble Sacha Inchi (Plukenetia volubilis) proteins
Sacha Inchi (Plukenetia volubilis) oil press-cake (SIPC) represents a new source of proteins of high biological value, with promissory food applications. However, knowledge of these proteins remains limited. In this study, a Sacha Inchi protein concentrate (SPC) was extracted from the SIPC, and prot...
ORGANISM(S): Plukenetia volubilis 
2025-05-07 | PXD052665 | Pride
Sachi inchi  alkali-soluble proteins  sds-page  proteome  blast2go  peaks. 
UnknownB2G-FAR, a species-centered GO annotation repository.
Not available
S-EPMC3065692 | biostudies-literature
TranscriptomicsTranscriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway
Purpose: The oxidation resistance gene 1 (OXR1) is crucial for protecting against oxidative stress, limiting neurodegeneration and maintaining normal lifespan in eukaryotes. However, the molecular function of OXR1 is still unknown. Previously we showed that human OXR1 regulates expression of antioxi...
ORGANISM(S): Homo sapiens 
2015-02-16 | E-GEOD-65949 | biostudies-arrayexpress
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