calculus - OmicsDI

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Aerococcus urinae NBRC 15544 = CCUG 36881 (39)
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Organisms

human oral metagenome (10)
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metagenome (1)

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Tissue

Dental plaque (21)
Tooth (3)
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Disease

Disease free (3)
Calculus of kidney (2)
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CHEBI ID

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CHEBI:D01422 (1)
CHEBI:15404 (1)
CHEBI:181398 (1)
CHEBI:19643 (1)
CHEBI:28383 (1)
CHEBI:1310 (1)

Metabolite Name

Cuauchichicine (1)
2-Heptyl-4(1H)-quinolone (1)
Benz(c)acridine (1)
COLFORSIN (1)
PILOCARPINE NITRATE (1)
5'-deoxyinosine (1)
Cer(d18:2(4E,14Z)/5-iso PGF2VI) (1)
1,2,3-Trimethoxy-5-ethylbenzene (1)
DG(5-iso PGF2VI/i-18:0/0:0) (1)
PC(PGE1/17:0) (1)
Phthalhydrazide (1)
4-(4-Guanidinobenzoyloxy)phenylacetate (1)
H-beta-Ala-Tyr-OH (1)
Lavandoside (1)
4,5-Dimethoxycanthin-6-one (1)
NORMETANEPHRINE (1)
6-Deoxy-fagomine (1)
(-)-Pelletierine (1)
Stepholidine (1)
Butylidenephthalide (1)
Acetyl-d-carnitine (1)
3-hydroxyvalerylcarnitine (1)
4alpha,14alpha-Dimethylcholesta-8,24-dien-3beta-ol (1)
1,2,3,4-Tetrahydro-4-oxo-1-naphthoic acid (1)
Geran-8-YL geran (1)
Gefarnate (1)
Cis-3-Hydroxy-l-proline (1)
EXP3179 (1)
Rhamnocitrin (1)
Quercetin 3,5,7,3,4-pentamethyl ether (1)

First Public Date

2020 (13)
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2018 (8)
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2016 (3)
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2014 (1)
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Classification

bacteria (4)

Study status

Not yet recruiting (4)
Recruiting (1)
Completed (1)

Study type

Transcription profiling by array (5)
Observational (3)
Interventional (3)

Release Date

2025 (73)
2023 (69)
2024 (65)
2021 (59)
2022 (54)
2020 (54)
2019 (41)
2018 (31)
2016 (16)
2017 (13)
2015 (11)
2014 (11)
2026 (8)
2013 (5)
2009 (4)
2010 (3)
2006 (3)
2012 (3)
2008 (3)
2007 (1)
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2003 (1)
2000 (1)

Lab affiliation

BioArCh, University of York, UK (6)
Max Planck Institute for the Science of Human History (3)
Max Planck Institute for the Science of Human History Department of Archaeogenetics (3)
Max Planck Institute for the Science of Human Histoy, Department of Archaeology (3)
BioArCh, Department of Archaeology, University of York, United Kingdom (1)
Department of Anthropology, University of Oklahoma, USA (1)
Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany. (1)
Department of Life Sciences and Systems Biology University of Turin Italy (1)
Department of Medicine, Division of Canadian Centre for Rural and Agricultural Health, College of Medicine, University of Saskatchewan (1)
GLOBE Institute, University of Copenhagen (Denmark) (1)
Jean-Michel CAMADRO, PhD DR1 CNRS "Mitochondria, Metals and Oxidative Stress" group leader Head "Mass Spectrometry Lab and Proteomics core Facility" Jacques Monod Institute UMR7592 CNRS - Paris University 15 rue Hélène Brion 75205 Paris Cedex 13, FRANCE (1)
Jean-Michel CAMADRO, PhD DR1 CNRS "Mitochondria, Metals and Oxidative Stress" group leader Head "Mass Spectrometry Lab and Proteomics core Facility" Jacques Monod Institute UMR7592 CNRS - Paris University 15 rue Hélène Brion 75205 Paris Cedex 13, FRANCE tel : 33(1)57278029 (1)
Jesper Velgaard Olsen, PhD Vice Director, Professor Novo Nordisk Foundation Center for Protein Research Proteomics Program University of Copenhagen Faculty of Health and Medical Sciences (1)
Lab of Structural Proteomics, Institute of Biomedical Chemistry (1)
Max Planck Institite for the Science of Human History, Department of Archaeogenetics (1)
Max Planck Institute for the Science of Human History, Ancient Protein Laboratory (1)
Max Planck Institute for the Science of Human History, Department of Archaeogenetics (1)
McGill University-Faculty of Dentistry 3640 University Street, Room M64, Montreal, QC Canada, H3A 0C7 (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
Research Center for Integrative Evolutionary Science, The Graduate University for Advanced Studies (SOKENDAI) (1)
School of Life Sciences, Jilin University, Changchun 130012, China (1)
School of Natural Sciences, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, U.K. (1)
Section for Evolutionary Genomics, Globe Insitute, University of Copenhagen (1)
The GLOBE Institute, University of Copenhagen, Copenhagen, Denmark McDonald Institute for Archaeological Research, University of Cambridge, Cambridge, UK (1)
The Globe Institue, University of Copenhagen (1)
Weizmann Institute of Science Archeological Science (1)
Weizmann Institute of Science Archeological Science (1)
Weizmann Institute of Science, Archeological Science (1)

Location

India (5)
Germany (1)

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Direct evidence of milk consumption from ancient human dental calculus, UK

This study investigated the consumption of milk products in the archaeological record, utilizing human dental calculus as a reservoir of dietary proteins from archaeological samples from across Eurasia. Protein extraction and generation of tryptic peptides from dental calculus was performed using a ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-10-04 | MSV000080221 | MassIVE

Direct evidence of milk consumption from ancient human dental calculus, St Helena

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-07-20 | MSV000079939 | MassIVE

Direct evidence of milk consumption from ancient human dental calculus, central Europe

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080765 | MassIVE

Direct evidence of milk consumption from ancient human dental calculus, northern southwest Asia

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2016-08-18 | MSV000080064 | MassIVE

Proteomic anlysis of dental calculus samples from Xiaohe

This analysis is a part of a larger study of the genomic origins of the Tarim Basin mummies. The dental calculus of seven individuals from Xiaohe contained ruminant dairy proteins, confirming milk consumption by the earliest inhabitants of Xiaohe.

ORGANISM(S): Homo sapiens (Human)

2021-09-09 | PXD027706 | Pride

Lc-ms Dental calculus

Proteomic Evidence of Dietary Sources in Ancient Dental Calculus

Archaeological dental calculus has emerged as a rich source of ancient biomolecules, including proteins. Previous analyses of proteins extracted from ancient dental calculus revealed the presence of the dietary milk protein β-lactoglobulin, providing direct evidence of dairy consumption in the archa...

ORGANISM(S): Homo sapiens (Human)

2018-07-18 | PXD009603 | Pride

Human Dental calculus Dental plaque Lc-ms/ms

Protein Extraction from Ancient Teeth and Dental Calculus Compatible with Subsequent DNA Extraction

Dental calculus is becoming a crucial material in the study of past populations, with increasing interest in its proteomic and genomic content. Here we suggest further development of protocol for analysis of ancient proteins and a combined approach for subsequent ancient DNA extraction. We tested th...

ORGANISM(S): Homo sapiens (Human)

2023-09-11 | PXD042668 | Pride

Protein extraction Palaeoproteomics Ancient dna Ancient proteins Dental calculus Bioarchaeology

Radcliffe dental calculus

PRJEB15334 | ENA

Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus

Mineralised dental plaque (calculus) has proven to be an excellent source of ancient biomolecules. In this study we present a Mycobacterium leprae genome (6.6-fold), the causative agent of leprosy, recovered via shotgun sequencing of 16th century human dental calculus from an individual from Trondhe...

ORGANISM(S): Homo sapiens (Human)

2020-10-19 | PXD017836 | Pride

Dental calculus Palaeoproteomics

Modern dental calculus

Metagenome sequencing of modern dental calculus

PRJEB31185 | ENA

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