case report - OmicsDI

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Unknown (35190)
Genomics (1063)
Transcriptomics (364)
Proteomics (190)
Genomic (33)
Metabolomics (24)
Methylation profiling (21)
Models (20)
Clinical (15)
Other (8)
Multiomics (2)

Organisms

Homo sapiens (360)
Mus musculus (75)
Arabidopsis thaliana (14)
Rattus norvegicus (10)
Saccharomyces cerevisiae (10)
Schizosaccharomyces pombe (7)
Drosophila melanogaster (7)
Gallus gallus (6)
Mammalia (5)
Caenorhabditis elegans (4)
Sus scrofa (4)
Oncorhynchus nerka (3)
Plasmodium falciparum (3)
Escherichia coli (3)
Dictyostelium discoideum (3)
Macaca mulatta (2)
Salmo salar (2)
Arachis duranensis (2)
Severe acute respiratory syndrome coronavirus 2 (1)
gamma proteobacterium HTCC2207 (1)
Rhodococcus erythropolis PR4 (1)
Lonicera japonica (1)
Caenorhabditis remanei (1)
Cicer arietinum (1)
Theileria parva (1)
Vigna unguiculata (1)
Pimephales promelas (1)
Myxococcus xanthus (1)
Cucumis melo (1)
Yarrowia lipolytica (1)

Organisms

Homo sapiens (213)
Mus musculus (52)
human metagenome (5)
Escherichia coli (5)
Arabidopsis thaliana (5)
Neisseria gonorrhoeae (4)
Adineta vaga (3)
unidentified (3)
Salmonella enterica subsp. enterica serovar Typhi (3)
Saccharomyces cerevisiae (3)
Drosophila melanogaster (3)
Burkholderia pseudomallei (3)
Segatella oris (2)
Neisseria elongata subsp. nitroreducens (2)
Mycolicibacterium mageritense (2)
Streptococcus dysgalactiae subsp. equisimilis (2)
Corynebacterium diphtheriae (2)
Streptococcus pneumoniae (2)
synthetic construct (2)
Macaca mulatta (2)
Macaca fascicularis (2)
human lung metagenome (2)
Mammalia (2)
Anopheles gambiae (2)
Gallus gallus (2)
Bos taurus (2)
Klebsiella pneumoniae (2)
human gut metagenome (2)
Variovorax sp. RO1 (1)
Escherichia coli O45:H2 str. 03-EN-705 (1)

Repository

ENA (920)
biostudies-arrayexpress (293)
geo (155)
pride (119)
EGA (86)
PAXDB (40)
dbGaP (33)
MetaboLights (21)
BioModels (20)
MassIVE (13)
iProX (9)
PanoramaPublic (4)
EVA (3)
GNPS (3)
jPOST (2)
GPMDB (1)
LINCS (1)
PeptideAtlas (1)

Tissue

Cell culture (13)
Brain (10)
Liver (6)
Permanent cell line cell (6)
B cell (5)
Blood (4)
Blood plasma (4)
T cell (4)
Cerebrospinal fluid (3)
Colon (3)
Whole body (3)
Blood serum (2)
Embryonic stem cell (2)
Fibroblast (2)
HeLa cell (2)
Leaf (2)
Peripheral blood mononuclear cell (2)
Skin (2)
Prefrontal Cortex (1)
Antenna (1)
B-lymphoblastoma cell (1)
Blood cell (1)
Blood platelet (1)
Bone (1)
Brainstem motor neuron (1)
Cell suspension culture (1)
Eosinophil (1)
Epithelial cell of lung (1)
Erythrocyte (1)
HT-29 cell (1)

Disease

Colorectal Neoplasms (6)
COVID-19 (3)
Colon cancer (3)
Acute leukemia (2)
Alzheimer's disease (2)
Amyotrophic lateral sclerosis (2)
Breast cancer (2)
Papillary renal cell carcinoma (1)
Mesothelioma (1)
IBDV infected (1)
Leukemia (1)
Monosporascus cannonballus infected (1)
Adenoid cystic carcinoma (1)
Normal (1)
Thyroid gland (1)
Benign neoplasm of colon, rectum, anus and anal canal (1)
Diabetes mellitus, hypertension, primary lung cancer, primary colorectal cancer, physical examination population (1)
Carcinoid Tumor (1)
Lymphoma (1)
Multiple Myeloma (1)
Metastatic colorectal cancer (1)
Neoplasm Metastasis (1)
Carcinoma (1)
Not Available (1)
Alzheimer's Disease (1)
Acute myeloid leukemia (1)
Alpha 1-antitrypsin deficiency (1)
Asthma (1)
Autoimmune lymphoproliferative syndrome (1)
Cervix carcinoma (1)

Technology Type

Mass Spectrometry (119)
Shotgun proteomics (55)
Bottom-up proteomics (24)
Mass spectrometry (19)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-dependent acquisition (14)
Data-independent acquisition (11)
Gel-based experiment (9)
Illumina 15K (8)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SWATH MS (5)
All-ion fragmentation (4)
HDMSE (4)
Illumina HiSeq 2500 (3)
SRM/MRM (3)
Top-down proteomics (3)
Mass spectrometry assay (2)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
HiSeq X Ten (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina HumanHap 550 (1)
Illumina HiSeq 2000 (1)
Fluorescence imaging (1)
Fluorescence intensity (1)
Affinity proteomics (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Q Exactive (7)
Agilent High resolution C scanner (4)
Illumina NovaSeq 6000 (3)
NextSeq 500 (3)
- (3)
LTQ Orbitrap Elite (3)
AB SOLiD 5500 (2)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion (2)
HISeq2500 (1)
MA900, Sony (1)
10x Chromium Controller (1)
454 GS Junior (1)
Covaris M220 (1)
GeneChipR Hybridization Oven 645, GeneChip Fluidics Station 450 (1)
GeneChipR Scanner 3000 (1)
Agilent DNA Microarray Scanner (1)
NA (1)
BGISEQ-500 (1)
Illumina HiSeq 2500 (1)
6530 Quadrupole Time-of-Flight LC/MS (Agilent instrument model) (1)
Exactive (1)
Instrument (1)
6546 Q-TOF LC/MS (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
MS:1000044 (1)

Publication Date

2014 (59)
2015 (50)
2012 (50)
2020 (48)
2025 (43)
2021 (42)
2024 (41)
2010 (40)
2013 (36)
2022 (34)
2026 (29)
2016 (29)
2023 (27)
2011 (25)
2008 (25)
2019 (24)
2018 (19)
2009 (18)
2017 (16)
2007 (14)
2004 (7)
2005 (4)
2006 (3)

UNIPROT ID/AC

P10523 (2)
Q15465 (2)
Q13635 (2)
P18537 (2)
P49841 (2)
P56704 (2)
P01133 (2)
Q02248 (1)
Q86TH3 (1)
Q147T7 (1)
Q99835 (1)
B4NUI3 (1)
Q92793 (1)
Q3MHS8 (1)
Q96BI3 (1)
Q5S414 (1)
O70263 (1)
Q6SPF9 (1)
Q9V6X7 (1)
Q6IAD4 (1)
Q9UBV2 (1)
P28159 (1)
Q92585 (1)
P49757 (1)
Q9BR09 (1)
Q8TE56 (1)
Q8NES3 (1)
P08646 (1)
Q504U8 (1)
P61981 (1)

CHEBI ID

CHEBI:86038 (13)
CHEBI:77537 (13)
CHEBI:84650 (13)
CHEBI:78811 (13)
CHEBI:76291 (13)
CHEBI:77547 (13)
CHEBI:84061 (13)
CHEBI:29140 (13)
CHEBI:85640 (13)
CHEBI:51824 (13)
CHEBI:77202 (13)
CHEBI:77228 (13)
CHEBI:74084 (13)
CHEBI:74087 (13)
CHEBI:74128 (13)
CHEBI:76368 (13)
CHEBI:73028 (13)
CHEBI:73870 (13)
CHEBI:73856 (13)
CHEBI:74086 (13)
CHEBI:74296 (13)
CHEBI:63419 (13)
CHEBI:28868 (13)
CHEBI:71687 (13)
CHEBI:31528 (13)
CHEBI:89742 (13)
CHEBI:73066 (13)
CHEBI:73072 (13)
CHEBI:84634 (13)
CHEBI:74265 (13)

Metabolite Name

Serine (5)
Proline (5)
Phenylalanine (5)
Valine (5)
Uric acid (5)
Lysine (4)
Tyrosine (4)
Threonine (4)
Isoleucine (4)
Leucine (4)
Glycine (4)
Kynurenic acid (4)
N-Acetylneuraminic acid (4)
Hypoxanthine (4)
Histidine (3)
Methionine (3)
Ornithine (3)
Alanine (3)
L-Threonine (3)
Taurocholic acid (3)
Pantothenic acid (3)
Xanthine (3)
Hippuric acid (3)
PG(18:1/18:2) (2)
LPE(16:1) (2)
LPE(20:3) (2)
LPE(22:5) (2)
LPG(18:2) (2)
LPI(16:0) (2)
LPI(18:2) (2)

First Public Date

2024 (121)
2025 (116)
2023 (116)
2026 (91)
2022 (90)
2021 (75)
2020 (72)
2019 (67)
2014 (49)
2018 (29)
2017 (25)
2016 (24)
2013 (23)
2015 (20)
2012 (2)

Modelling Approach

Constraint-based model (13)
Ordinary differential equation model (6)
Population model (1)

Study status

Recruiting (5)
Completed (5)
Active, not recruiting (3)
Terminated (1)
Not provided (1)

Lab affiliation

Institute for Genetics and CECAD Research Center, University of Cologne, Cologne, Germany (3)
Department of Biology – Cellular Proteostasis and Mass Spectrometry, University of Konstanz (2)
Head of Laboratory of Neuro-Oncology Clinical & Cancer Proteomics Erasmus MC the Netherlands (2)
Systems Biology Ireland, University College Dublin (2)
1)VIB Center for Medical Biotechnology, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium 2)Department of Biomolecular Medicine, Ghent University, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium 3)VIB Proteomics Core, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium (1)
1. Harvard T.H. Chan School of Public Health, Boston, MA 02115 (1)
1Department of Chemistry, University of Konstanz, Konstanz, Germany 2Konstanz Resea1Department of Chemistry, University of Konstanz, Konstanz, Germany 2Konstanz Research School-Chemical Biology, University of Konstanz, Konstanz, Germany (1)
Aalborg University Laboratory for Medical Massspectrometry (1)
Bavarian Center for Biomolecuar Mass Spectrometry (BayBioMS, Technical University of Munich (TUM), Freising, Germany (1)
Biochemistry & Molecular Biology Department and Plant Resilience Institute, Michigan State University (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH, Utrecht, The Netherlands and Netherlands Proteomics Center, Padualaan 8, 3584 CH, Utrecht, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Utrecht, The Netherlands and Netherlands Proteomics Center, Utrecht, The Netherlands (1)
CEITEC-MU, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic (1)
COI-NDM (University of Oxford) (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Cambridge Institute for Medical Research, University of Cambridge, CB2 0XY, UK (1)
Case Western Reserve University, Department of Genetics and Genome Sciences, School of Medicine (1)
Cell Biology, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK. (1)
Cell and Chemical Biology LUMC The Netherlands (1)
Cell and Chemical Biology Leiden University Medical Center Leiden, The Netherlands (1)
Cellzome, a GSK company (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Center for Technological Development in Health, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil (1)
Centro de Química Estrutural, Instituto Superior Técnico, ULisboa, Lisboa, Portugal (1)
Core Facilities – Clinical Proteomics and Metabolomics, IRCCS Istituto G. Gaslini, Genova, Italy (1)
Department of Biochemistry and Molecular Biophysics (1)
Department of Biochemistry, Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, Berlin Institute of Health, Berlin, Germany (1)
Department of Biochemistry, School of Medicine, Case Western Reserve University (1)
Department of Biology KU Leuven (University of Leuven) Belgium (1)
Department of Biology, Faculty of Basic Science, Imam Hossein University, Tehran, Iran. (1)

Keyword

Diet (2)
Early onset (1)
Young onset (1)
Young adult (1)
Cancer risk factors (1)
SAR444245 (1)
NIPEC-LT (1)
Awareness (1)
Lifestyle behaviors (1)
Weight Control (1)
Distance Medicine (1)
Older (1)
Minority (1)
Care Coordination (1)
Somatostatin (1)
Lanreotide Autogel 120mg (1)
Somatuline Depot (1)
Lanreotide Autogel (1)
NET (1)
Carcinoid tumour (1)
Neuroendocrine tumour (1)
Cancer genetics (1)
CRS (1)
African American (1)
Flucytosine (1)
Anaplastic Astrocytoma, Glioblastoma (1)
HIPEC (1)
Diarrhea (1)
Cancer survivor (1)
Keytruda (1)

IsPrivate

False (20)

Submitter Keywords

COVID-19 (1)

Classification

bacteria (62)
viruses (5)
fungi (3)
protozoa (3)
helminths (1)

Modification

15.994915 (1)
4x(2)H labeled dimethylated residue (1)
57.021464 (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (162)
RNA-seq of coding RNA (37)
Comparative genomic hybridization by array (22)
ChIP-seq (12)
RNA-seq of non coding RNA (12)
Interventional (9)
Unknown experiment type (8)
Other (7)
Genotyping by array (6)
Methylation profiling by array (5)
Methylation profiling by high throughput sequencing (4)
Observational (4)
Animal - One-color microarray (3)
ChIP-chip by tiling array (3)
Proteomic profiling by array (2)
Observational patient registry (2)
Transcription profiling by MPSS (1)
MeDIP-seq (1)
Human - Methylation microarray (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
RIP-seq (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (5316)
2025 (4481)
2023 (4439)
2021 (4129)
2024 (3535)
2020 (3114)
2019 (2110)
2018 (1658)
2017 (1133)
2016 (966)
2015 (808)
2014 (729)
2026 (595)
2013 (498)
2012 (461)
2011 (335)
2010 (307)
2009 (212)
2008 (172)
2007 (131)
2006 (108)
2005 (61)
2004 (59)
2002 (32)
2003 (30)
2000 (19)
2001 (17)
1999 (10)
1998 (10)
1996 (2)

Location

United States (7)
Germany (4)
Norway (2)
Turkey (2)
Poland (2)
Russia (2)
Spain (2)
Italy (2)
China (2)
Finland (1)
Serbia (1)
India (1)
Croatia (1)
South Africa (1)
Latvia (1)
Ukraine (1)
Chile (1)
Australia (1)
South Korea (1)
Czechia (1)
Belgium (1)
Canada (1)
Brazil (1)
France (1)
Netherlands (1)

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